G106053


Basic Information

Item Value
gene id G106053
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2564290 ~ 2564535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119773
ccattattacatcaccacagcagtaaagacaggcaggtagttgacttccattattacatcaccagggcagtaaagacaggcaggtagttgacttccattattacatcaccagggcagtaaagacaggcaggtagttgacttccattattacatcaccacagcagtaaagacaggcaggtagttgacttccattattacatcaccacagcagtaaagacaggcaggtagttgacttccattattaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119773 True 246 lncRNA 0.43 1 2564290 2564535

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 143669 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 386294 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 443835 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 662842 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 710720 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 413701 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 414251 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 842652 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1486248 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1501457 4065992 ~ 4085680 (+)
G106045 NA non-coding upstream 9190 2554712 ~ 2555100 (+)
G106040 NA non-coding upstream 14152 2549855 ~ 2550138 (+)
G106023 LOC106593068 non-coding upstream 21716 2539957 ~ 2542574 (+)
G106015 NA non-coding upstream 27408 2514924 ~ 2536882 (+)
G106006 NA non-coding upstream 77860 2486228 ~ 2486430 (+)
G106055 NA non-coding downstream 944 2565479 ~ 2565683 (+)
G106056 NA non-coding downstream 3527 2568062 ~ 2568266 (+)
G106065 NA non-coding downstream 14474 2579009 ~ 2579804 (+)
G106068 NA non-coding downstream 17936 2582471 ~ 2582785 (+)
G106069 NA non-coding downstream 23037 2587572 ~ 2588898 (+)
G106019 NA other upstream 36318 2520716 ~ 2527972 (+)
G105042 NA other upstream 853733 1708969 ~ 1710557 (+)
G105036 NA other upstream 863859 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1211427 1309202 ~ 1390936 (+)
G104761 NA other upstream 1410541 1153061 ~ 1153749 (+)
G106122 NA other downstream 153426 2717961 ~ 2718525 (+)
G106240 NA other downstream 410288 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 642262 3006312 ~ 3391033 (+)
G106575 NA other downstream 1074899 3639434 ~ 3800352 (+)

Expression


Co-expression Network