G106057


Basic Information

Item Value
gene id G106057
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2644902 ~ 2646178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119778
GGTTTATTAAGGTTTATTAAGGTTAGCTTTACACTGCAAACAaagatgagaaaacactgtcaaGTCTGTGTTTCAAATTacactctattctctatatagtgcactacctttggccaggCTTTTACTGTGATGTAAATTCATTACCAAAAATATACCTgttcctctgtgtctgtttcaTTGTTggtaaaaataaatacttttaatTAAAGATATCCACCATCTTAAACCAGAGTATCACACAACGTGTCTTTAACCtgtcctctccttatctcctgTCCTTGTTTCCTACCCTCGTCTCCTCTTCCTAACTCTCACATGCAGCTCCAGAATCCATCAGTCTTTGTCCAAGACTGGGAAGTTTTTTTCCTCATATAAAGCTAAACTAGGACCCATCCAAAACCCATTTCAACCAAACCTATAGGCCAAATAAACATGTCAAACTCTTTCAAATACTCGAGCTAGGCTTGATTTAGTTTGCCCAGTACAAAGTACTTGGAAATCATTTCCATATTTATTTGATCCAGGTCCCTTATTCATAAAGAGTCTCGGTGTatgaatgctgatctaggatcagttttgccttgtaGAATATAAGGATGATTGTAAAAGAGGGGGCCCTGATGTTGGATCAGCACTCCTCCTCCGAGACGCtctatgaatacaggcccaggtCCATGTCTTCCAGCTCCTCGGTCTCAGTGGAGTTTCTCCCACATGAAGACCACTAGGATAGCCACCACAGCCAGGCCGATAGACAGCAGCTTCAGCCCCTCTCTGTCCAGGCTCCAGGGGCTCCAGGATACAGTCAGCACGCCTGAGGAGGGGACGGACCCATTCTG

Function

NR:

description
threonylcarbamoyladenosine tRNA methylthiotransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119778 True 839 lncRNA 0.43 2 2644902 2646178

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 224281 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 466906 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 524447 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 743454 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 791332 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 332058 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 332608 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 761009 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1404605 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1419814 4065992 ~ 4085680 (+)
G106080 NA non-coding upstream 11140 2632915 ~ 2633762 (+)
G106070 NA non-coding upstream 53905 2590319 ~ 2590997 (+)
G106069 NA non-coding upstream 56004 2587572 ~ 2588898 (+)
G106068 NA non-coding upstream 62117 2582471 ~ 2582785 (+)
G106065 NA non-coding upstream 65098 2579009 ~ 2579804 (+)
G106107 NA non-coding downstream 35755 2681933 ~ 2682287 (+)
G106120 NA non-coding downstream 68874 2715052 ~ 2715404 (+)
G106124 NA non-coding downstream 74875 2721053 ~ 2722361 (+)
G106143 NA non-coding downstream 109830 2756008 ~ 2756799 (+)
G106151 NA non-coding downstream 123807 2769985 ~ 2770484 (+)
G106019 NA other upstream 116930 2520716 ~ 2527972 (+)
G105042 NA other upstream 934345 1708969 ~ 1710557 (+)
G105036 NA other upstream 944471 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1292039 1309202 ~ 1390936 (+)
G104761 NA other upstream 1491153 1153061 ~ 1153749 (+)
G106122 NA other downstream 71783 2717961 ~ 2718525 (+)
G106240 NA other downstream 328645 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 560619 3006312 ~ 3391033 (+)
G106575 NA other downstream 993256 3639434 ~ 3800352 (+)

Expression


Co-expression Network