G106247


Basic Information

Item Value
gene id G106247
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2988147 ~ 2989181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120027
ttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtatactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggccATGTGTCTTCTCTGTCAGGTTGACACCTCATCTACTACACAAACAATATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120027 True 561 lncRNA 0.39 4 2988147 2989181

Neighbor

gene id symbol gene type direction distance location
LOC118937337 NA coding upstream 7954 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 9623 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 567526 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 810151 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 867692 2116553 ~ 2120455 (+)
mboat1 LOC106573215 coding downstream 418006 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1061602 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1076811 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 1123941 4113122 ~ 4119742 (+)
deptor deptor coding downstream 1247699 4236880 ~ 4302536 (+)
G106243 NA non-coding upstream 7813 2979396 ~ 2980334 (+)
G106238 NA non-coding upstream 16568 2970334 ~ 2971579 (+)
G106229 NA non-coding upstream 38443 2947549 ~ 2949704 (+)
G106224 NA non-coding upstream 46594 2941146 ~ 2941553 (+)
G106194 NA non-coding upstream 115229 2872322 ~ 2872918 (+)
G106252 NA non-coding downstream 15883 3005064 ~ 3005325 (+)
G106253 cdkal non-coding downstream 17131 3006312 ~ 3391033 (+)
G106260 NA non-coding downstream 35952 3025133 ~ 3025905 (+)
G106263 NA non-coding downstream 51075 3040256 ~ 3046547 (+)
G106267 NA non-coding downstream 67830 3057011 ~ 3057663 (+)
G106122 NA other upstream 269622 2717961 ~ 2718525 (+)
G106019 NA other upstream 460175 2520716 ~ 2527972 (+)
G105042 NA other upstream 1277590 1708969 ~ 1710557 (+)
G105036 NA other upstream 1287716 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1635284 1309202 ~ 1390936 (+)
G106575 NA other downstream 650253 3639434 ~ 3800352 (+)
G106595 NA other downstream 687084 3676265 ~ 3677850 (+)
G106775 NA other downstream 1037894 4027075 ~ 4027594 (+)

Expression


Co-expression Network