G106263


Basic Information

Item Value
gene id G106263
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3040256 ~ 3046547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120049
CGCTAATCCTGGAATAGTTGTCCTCGGCAACGGATTTCTAAACGTGGCAAGAAAAGTTGATATGAGACGATGTTGagtcagtagtgttgtagtggtgtgggtcagtagtgttgtggaggtgtgggtcagtagtggtgtgggtcagtagtgttgtgggtcagtagtgttgtggaggtgtgggtcagtagtggtgtgggtcagtagtggtgtggaggtgtgggtcagtagtggtgtggaggtgtgggtcagtagtggtgtggaggtgtgggtcagtagtggtgtggaggtgtgggtcagtagtggtgtgggtcagtagtgttgtagaggtgtgggtcagtagtgttgtggaggtgtgggtcagtagtggtgtgggtcagtagtgttgtgggtcagtagtgttgtggaggTGTGAGTCAGTAGCGTTGTGAGTAGTGGTAGAGACCATTAGACTGAAGAGTAGTGGTAGAAACTAGACATCAAGTGTTTCTCTGTAGATCTCATCTCTTCTGACAGCGGATCAGTCACAAATGTCAcactattcccaatatagtacaCTAATTTAGACCAAAcactcaggtcaaaagtagtgcactatatagggcatagtgTACTATTTGGGAGACAGTGGTTCCAGTAAGTCAGCGTTGTAGATTTGAAATTCTTTTCACATACTTGTGTTTCTGAGGACATTTAAAAAGGTGAACTCATCCCTCTGGTGATTCCTAAGGATCCCTCCTTCCACACTTGTGGACTCGCTGTTTATGCTGCTCCTCTGCACATTGCATTGACAGGCCTGGGGTAGTTCGATCTGCCTGccgctgtttgtgtgtgttttaacaCAGCTAATGATACAAGGAGATATGGTCCTGTCCTACCTCAGTGTTGTCCAGAGGTAATGAGAGGTAATAGTCATGTCCTACCTCAGTGTTGTTCAGAGGTAATGAGAGATACTAGTCATGTCCTACCTCAGTGTTGTCCAGAGGTAATGAGAGGTACTAGTCATGTCCTACCTCAGTGTTGTCCAGAGG
>TU120053
CGCTAATCCTGGAATAGTTGTCCTCGGCAACGGATTTCTAAACGTGGCAAGAAAAGTTGATATGAGACGATGTTGagtcagtagtgttgtagtggtgtgggtcagtagtgttgtggaggtgtgggtcagtagtggtgtgggtcagtagtgttgtggtggtgtgggtcagtagtgttgtagtgttgtgggtcagtagtggtgtggaggtgtgggtcagtagtgttgtggagGTCTGGGTCAGTAGTGTTGTAgaggtgtgggtcagtagtgttgtggaggtgtgggtcagtagtgttgtgg
>TU120054
CGCTAATCCTGGAATAGTTGTCCTCGGCAACGGATTTCTAAACGTGGCAAGAAAAGTTGATATGAGACGATGTTGagtcagtagtgttgtagtggtgtgggtcagtagtgttgtggaggtgtgggtcagtagtggtgtgggtcagtagtgttgtggtggtgtgggtcagtagtgttgtagtggtgtgggtcagtagtgttgtagaggtgtgggtcagtagtgttgtagaggtgtgggtcagtagtgttgtgg
>TU120052
GTCCTACCTCAGTGTTGTTCAGAGGTAATGAGAGATACTAGTCATGTCCTACCTCAGTGTTGTTCAGAGGTAATGAGAGACACTAGTCATGTCCTACCTTAGTGTTGTCCAGAGGTAATGAGAGGTACTAGTCCTGTCCTACCTCAGTGTTGTCCAGAGGTAATGAGAGACACTAGTCATGGCCTACCTTAGTGTTGTTCAGAGGTAATGAGAGGTACTAGTCATGTCCTACCTCAGTGTTGTCCAGAGGTAATGAGAGACACTAGTCATGTCCTACCTCAGTGTTGTCCAGAGGTAATGAGAGACACTAGTCATGGCCTACCTCAGTGTTGTTCAGAGGTAATGAGAGACACTAGTCATGGCCTACCTTAGTGTTGTTCAGAGGTAATGAGAGGTAATGAGAGGTAATAGTCATGTCCTACCTCAGTGTTGTTCAGAGGTAATGAGAGATACTAGTCATGTCCTACCTCAGTGTTGTCCAGAGGTAATGAGAGGTACTAGTCATGTCCTACCTCAGTGTTGTCCAGAGG

Function

NR:

description
uncharacterized protein LOC105358166, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120049 False 1028 lncRNA 0.47 4 3040256 3046547
TU120053 False 300 lncRNA 0.37 3 3040256 3043013
TU120054 False 252 lncRNA 0.49 3 3040256 3043587
TU120052 True 530 lncRNA 0.45 3 3044589 3046547

Neighbor

gene id symbol gene type direction distance location
LOC118937337 NA coding upstream 60063 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 61732 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 619635 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 862260 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 919801 2116553 ~ 2120455 (+)
mboat1 LOC106573215 coding downstream 360640 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1004236 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1019445 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 1066575 4113122 ~ 4119742 (+)
deptor deptor coding downstream 1190333 4236880 ~ 4302536 (+)
G106260 NA non-coding upstream 14351 3025133 ~ 3025905 (+)
G106252 NA non-coding upstream 34931 3005064 ~ 3005325 (+)
G106247 NA non-coding upstream 51075 2988147 ~ 2989181 (+)
G106243 NA non-coding upstream 59922 2979396 ~ 2980334 (+)
G106238 NA non-coding upstream 68677 2970334 ~ 2971579 (+)
G106267 NA non-coding downstream 10464 3057011 ~ 3057663 (+)
G106269 NA non-coding downstream 11601 3058148 ~ 3058788 (+)
G106277 NA non-coding downstream 21107 3067654 ~ 3068028 (+)
G106284 NA non-coding downstream 32553 3079100 ~ 3081508 (+)
G106285 NA non-coding downstream 33016 3079563 ~ 3082325 (+)
G106240 NA other upstream 781 2974823 ~ 3039475 (+)
G106122 NA other upstream 321731 2717961 ~ 2718525 (+)
G106019 NA other upstream 512284 2520716 ~ 2527972 (+)
G105042 NA other upstream 1329699 1708969 ~ 1710557 (+)
G105036 NA other upstream 1339825 1699073 ~ 1700431 (+)
G106253 cdkal other downstream 160250 3006312 ~ 3391033 (+)
G106575 NA other downstream 592887 3639434 ~ 3800352 (+)
G106595 NA other downstream 629718 3676265 ~ 3677850 (+)
G106775 NA other downstream 980528 4027075 ~ 4027594 (+)

Expression


Co-expression Network