XLOC_020807 (si:dkey-19a16.2)


Basic Information

Item Value
gene id XLOC_020807
gene name si:dkey-19a16.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6073628 ~ 6082447 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041007
GAGCCATAACAAGATTTGGCCGTTTTAGATAGAGGACTTCGCtttttgattttataaaaaacaatcaaattagCTCTGCTTCTTTTACCGTAATTCGAGGATGTGGTGTATGTGCATGACATTACAGAGGACATAACGTTTAAAATCCTAATTATAGTTGGAGGTCATTCGTGTTCCACAACTTTATCATCATGATGAGATGCGCgccggtGCTGTTTCTTTTACCAGTTTTCGCTATCgGTGTCCCCAGATTTGATGAAATGACGATTGTGTCTGTGTCAAAGGGAGACTCTGTTGTTCTGCACACTAATATtactgaaatacagaaatatgAAGAGATCGTATATAGATTTAAAAAGGAACATGTTATTGCCAGAATCATAAAAGATAAACAGATCTTCTCTACATTTGACAATGAAGCCGATGGGATCTTTAAAGGCAAACTGCACCTGAATCGGAATGGAAATCTCATCATCACTAATATCGGACCGAACACCTCTGGAATATATGAGCTGGATGTCAAGGGGAAATATCACACATTACACAATTCATTCAATGTGACCATCAGAGatggagagaatcAGCTGTCAGTGAAGATGGGAGATTCTGTCATTCTAGAATCTGGTGTTGAATTAGACGATGATGACCTGGTACAATGGAGACTTGAAGACTTTGTCATAGCAGAAATCAACCAAACAGCTCATTCCTATGTTCATGATGAGAGATTCAGAGATAGACTGAGGGTGGATAATGAGACTGGATCTCTGATCATTGACAACATCAGAAACACAGACTGTGGAGTTTATCACCTCGACATCATGGGCAGCCGGCATGTCATATTCAAGAaaatcattctgtctgtctgttGTAACAAAGATCTGGAGATTGACCCTTGGAGACTGCCATTCTTTGTTGTTTCTCCACTGCTGGCACTTACTATTTTAATTCTTGTGGTGTGCTGTTGCAAGAgaatatgcaaacaaaaagatcAGAAGAAATTCAAAAATAGAGGAGGAGAAAAGCGTCAGACGATCTGATGGGATCCTGTAAGATCAGCAAATATCTACCACAGTGTATCCATTTTAAGCAAATTACGAAAAAGGTATACGAAATGTGCTTTTGCGTTTTCTTTTCGGGTATTATTGATTGGCCTATGTTTAAACAGcttgttacaaaaaaaatgtatatataatctgAAAAAAGCAAGACTTAATTCAAACTATAGCCTCACTAACCCTGGGCTCTGTATCGTGATGCTGGCTTTACAGATTCAGGATTACAGCATTAGTTGAAATGTAATCAGGCTTTGTTGGTTTAATGACACTTTGATCATGAGTAAATGAGCGCATACAGATGAAAGTGCGACATCAGtaacaaacagccaatcacaggccTTGAAACATAAAAAGGCTGTAATCGAAAATACTCAGTCAGGGTGTTTGAATGTTTCTAGTGTTGGAATATGAAGCCAactccatgcgtgttcaataagaaaaggacTGGAGAGtgtttttcttcaatgccaaaaatatcagtaatttattagatacaaatgaataatttgataaagtttcttctgttgaacataaaacacaatatttttaaagataaaagCACCTATTTACATCCACAGTAGAAAACAAATTATCGACTCAATGGCTGCtgtgtttttaacattcttcacaatatcttttgtgttcaacagaggaaagaaattcAAACCGGTTTGatcaggatgagtaaatgatgacagaatttccataTTTGGatgcactgtccctttaaaagaaaaaatatgaatattttaaaacatttatacagCAAGATGAAAAGAGCTTTCAAAAAAGTAGATGTGAAAAAATGATGTGTAAATATAGCCTACAAAACTCAAGTATGAGcatgtaaatgtaatatatttcagttttttttttcttatagccACTTTAAGCCTTTACTGCAGAAATGTATCAAAGTGCAATACTAACTAGCTTTCTAAACTAACGTATGGAAATGGTGGAATTAGTAGATAAATGGATAATTTTAACTGCGAAAAGCAAAATTAgctcagtttatgaatattaataatcaataataacg
>TCONS_00041008
GAGCCATAACAAGATTTGGCCGTTTTAGATAGAGGACTTCGCtttttgattttataaaaaacaatcaaattagCTCTGCTTCTTTTACCGTAATTCGAGGATGTGGTGTATGTGCATGACATTACAGAGGACATAACGTTTAAAATCCTAATTATAGTTGGAGGTCATTCGTGTTCCACAACTTTATCATCATGATGAGATGCGCgccggtGCTGTTTCTTTTACCAGTTTTCGCTATCgGTGTCCCCAGATTTGATGAAATGACGATTGTGTCTGTGTCAAAGGGAGACTCTGTTGTTCTGCACACTAATATtactgaaatacagaaatatgAAGAGATCGTATATAGATTTAAAAAGGAACATGTTATTGCCAGAATCATAAAAGATAAACAGATCTTCTCTACATTTGACAATGAAGCCGATGGGATCTTTAAAGGCAAACTGCACCTGAATCGGAATGGAAATCTCATCATCACTAATATCGGACCGAACACCTCTGGAATATATGAGCTGGATGTCAAGGGGAAATATCACACATTACACAATTCATTCAATGTGACCATCAGAGatggagagaatcAGCTGTCAGTGAAGATGGGAGATTCTGTCATTCTAGAATCTGGTGTTGAATTAGACGATGATGACCTGGTACAATGGAGACTTGAAGACTTTGTCATAGCAGAAATCAACCAAACAGCTCATTCCTATGTTCATGATGAGAGATTCAGAGATAGACTGAGGGTGGATAATGAGACTGGATCTCTGATCATTGACAACATCAGAAACACAGACTGTGGAGTTTATCACCTCGACATCATGGGCAGCCGGCATGTCATATTCAAGAaaatcattctgtctgtctgttGTAACAAAGATCTGGAGATTGACCCTTGGAGACTGCCATTCTTTGTTGTTTCTCCACTGCTGGCACTTACTATTTTAATTCTTGTGGTGTGCTGTTGCAAGAgaatatgcaaacaaaaagatcAGAAGAAATTCAAAAATAGAGGAGGAGAAAAGCGTCAGACGATCTGATGGGATCCTGTAAGATCAGCAAATATCTACCACAGTGTATCCATTTTAAGCAAATTACGAAAAAGGTATACGAAATGTGCTTTTGCGTTTTCTTTTCGGGTATTATTGATTGGCCTATGTTTAAACAGcttgttacaaaaaaaatgtatatataatctgAAAAAAGCAAGACTTAATTCAAACTATAGCCTCACTAACCCTGGGCTCTGTATCGTGATGCTGGCTTTACAGATTCAGGATTACAGCATTAGTTGAAATGTAATCAGGCTTTGTTGGTTTAATGACACTGATTGTCAGCTTTCTCTGTAAACTCAAGCTTTGATCATGAGTAAATGAGCGCATACAGATGAAAGTGCGACATCAGtaacaaacagccaatcacaggccTTGAAACATAAAAAGGCTGTAATCGAAAATACTCAGTCAGGGTGTTTGAATGTTTCTAGTGTTGGAATATGAAGCCAactccatgcgtgttcaataagaaaaggacTGGAGAGtgtttttcttcaatgccaaaaatatcagtaatttattagatacaaatgaataatttgataaCAG

Function

symbol description
si:dkey-19a16.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-493 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000058794

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041007 False 2097 mRNA 0.35 8 6073628 6082447
TCONS_00041008 True 1601 mRNA 0.38 6 6074808 6082447

Neighbor

gene id symbol gene type direction distance location
XLOC_020806 NA coding downstream 6761 6064870 ~ 6066867 (-)
XLOC_020804 CU468041.2 coding downstream 18879 6026595 ~ 6054749 (-)
XLOC_020805 CU468041.1 coding downstream 27033 6044172 ~ 6046595 (-)
XLOC_020803 NA coding downstream 63806 5977406 ~ 6009822 (-)
XLOC_020802 si:rp71-36a1.3 coding downstream 115562 5940398 ~ 5958066 (-)
XLOC_020808 BX004840.1 coding upstream 2860 6085307 ~ 6087757 (-)
XLOC_020809 si:dkey-19a16.4 coding upstream 22445 6104892 ~ 6144428 (-)
XLOC_020810 NA coding upstream 72228 6154675 ~ 6167952 (-)
XLOC_020811 BX004840.2 coding upstream 87924 6170371 ~ 6176259 (-)
XLOC_020812 si:rp71-36a1.5 coding upstream 100534 6182981 ~ 6194580 (-)
XLOC_020799 BX005329.1 non-coding downstream 179000 5871035 ~ 5894628 (-)
XLOC_020798 NA non-coding downstream 201356 5860140 ~ 5872272 (-)
XLOC_020815 NA non-coding upstream 161295 6243742 ~ 6246739 (-)
XLOC_020816 AL928685.1 non-coding upstream 191134 6273581 ~ 6282189 (-)

Expression


Co-expression Network