G106333


Basic Information

Item Value
gene id G106333
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3164230 ~ 3164774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120138
CAGTGAGATCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTAGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTAGACTGTCCAGGGTAGTGGGATTATGTTGTGGAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGGAATGAGGTCTAACTGGACTGTCCACGGTAGTGGGATTATGTTGTGGAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGGAACGAGATCTAACTAGACTGTCAAGGGTAGTGGGATTATGTTGTGGAATGAGATctcatgaggagaggagagagaggtgagagg
>TU120139
CAGTGAGATCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGATCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGAAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGGAACGAGATCTAACTAGACTGTCAAGGGTAGTGGGATTATGTTGTGGAATGAGATctcatgaggagaggagagagaggtgagagg
>TU120140
CAGTGAGATCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTAGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGATCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGAAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGGAACGAGATCTAACTAGACTGTCAAGGGTAGTGGGATTATGTTGTGGAATGAGATctcatgaggagaggagagagaggtgagagg
>TU120141
CAGTGAGATCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTAGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTAGACTGTCCAGGGTAGTGGGATTATGTTGTGGAATGAGGTCTAACTAGACTGTCCACGGTAGTGGGATTATGTTGTGGAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGATCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGAAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGGAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGGAACGAGATCTAACTAGACTGTCAAGGGTAGTGGGATTATGTTGTGGAATGAGATctcatgaggagaggagagagaggtgagagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120138 False 361 lncRNA 0.48 2 3164230 3164774
TU120139 False 269 lncRNA 0.48 3 3164230 3164774
TU120140 False 315 lncRNA 0.52 3 3164230 3164774
TU120141 True 453 lncRNA 0.44 3 3164230 3164774

Neighbor

gene id symbol gene type direction distance location
LOC118937337 NA coding upstream 184037 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 185706 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 743609 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 986234 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 1043775 2116553 ~ 2120455 (+)
mboat1 LOC106573215 coding downstream 242413 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 886009 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 901218 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 948348 4113122 ~ 4119742 (+)
deptor deptor coding downstream 1072106 4236880 ~ 4302536 (+)
G106326 NA non-coding upstream 13361 3150373 ~ 3150869 (+)
G106325 NA non-coding upstream 16088 3147360 ~ 3148142 (+)
G106305 NA non-coding upstream 41855 3121333 ~ 3122375 (+)
G106301 NA non-coding upstream 50487 3112988 ~ 3113743 (+)
G106291 NA non-coding upstream 57523 3090889 ~ 3106707 (+)
G106351 NA non-coding downstream 37831 3202605 ~ 3266098 (+)
G106368 NA non-coding downstream 77583 3242357 ~ 3242931 (+)
G106371 NA non-coding downstream 81635 3246409 ~ 3246714 (+)
G106388 NA non-coding downstream 103858 3268632 ~ 3268878 (+)
G106400 NA non-coding downstream 119546 3284320 ~ 3285155 (+)
G106240 NA other upstream 124755 2974823 ~ 3039475 (+)
G106122 NA other upstream 445705 2717961 ~ 2718525 (+)
G106019 NA other upstream 636258 2520716 ~ 2527972 (+)
G105042 NA other upstream 1453673 1708969 ~ 1710557 (+)
G105036 NA other upstream 1463799 1699073 ~ 1700431 (+)
G106253 cdkal other downstream 42023 3006312 ~ 3391033 (+)
G106575 NA other downstream 474660 3639434 ~ 3800352 (+)
G106595 NA other downstream 511491 3676265 ~ 3677850 (+)
G106775 NA other downstream 862301 4027075 ~ 4027594 (+)

Expression


Co-expression Network