Gene
RNA
| Item | Value |
|---|---|
| gene id | G107282 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 3455423 ~ 3456292 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Ice nucleation protein, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU121609 | False | 274 | lncRNA | 0.41 | 3 | 3455423 | 3456292 |
| TU121610 | True | 594 | lncRNA | 0.55 | 2 | 3455423 | 3456292 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944031 | NA | coding | downstream | 11882 | 3441086 ~ 3443541 (-) |
| LOC118937342 | e2f3 | coding | downstream | 50311 | 3392063 ~ 3405112 (-) |
| cdkal1 | cdkal | coding | downstream | 64411 | 2644890 ~ 3391012 (-) |
| LOC110511524 | NA | coding | downstream | 919261 | 2533802 ~ 2536162 (-) |
| LOC110514306 | NA | coding | downstream | 936401 | 2518187 ~ 2519022 (-) |
| LOC110512975 | LOC105909030 | coding | upstream | 71078 | 3527370 ~ 3663403 (-) |
| LOC118937345 | NA | coding | upstream | 158791 | 3615083 ~ 3619295 (-) |
| LOC118937344 | NA | coding | upstream | 179354 | 3635646 ~ 3637696 (-) |
| LOC118937343 | NA | coding | upstream | 185002 | 3641294 ~ 3643287 (-) |
| LOC110505062 | LOC106572986 | coding | upstream | 219973 | 3676265 ~ 3701014 (-) |
| G107270 | NA | non-coding | downstream | 22302 | 3431926 ~ 3433121 (-) |
| G107219 | NA | non-coding | downstream | 29445 | 3367145 ~ 3425978 (-) |
| G107261 | NA | non-coding | downstream | 39943 | 3414342 ~ 3415480 (-) |
| G107232 | NA | non-coding | downstream | 89959 | 3363896 ~ 3365464 (-) |
| G107303 | NA | non-coding | upstream | 48689 | 3504981 ~ 3506013 (-) |
| G107306 | NA | non-coding | upstream | 57221 | 3513513 ~ 3513988 (-) |
| G107254 | NA | non-coding | upstream | 68322 | 3524614 ~ 3526803 (-) |
| G107315 | NA | non-coding | upstream | 109980 | 3566272 ~ 3566645 (-) |
| G107316 | NA | non-coding | upstream | 113177 | 3569469 ~ 3572630 (-) |
| G106003 | NA | other | downstream | 970300 | 2483860 ~ 2485123 (-) |
| G106001 | NA | other | downstream | 972067 | 2482941 ~ 2483356 (-) |
| G105938 | NA | other | downstream | 1091892 | 2362999 ~ 2363531 (-) |
| G105636 | NA | other | downstream | 1334922 | 2118079 ~ 2120501 (-) |
| G105492 | NA | other | downstream | 1493836 | 1958484 ~ 1961587 (-) |
| LOC110506994 | carmil1 | other | upstream | 296269 | 3705036 ~ 3924570 (-) |
| G107456 | NA | other | upstream | 535034 | 3991326 ~ 3992847 (-) |
| G107574 | NA | other | upstream | 839133 | 4295425 ~ 4296815 (-) |
| G107576 | NA | other | upstream | 841153 | 4297445 ~ 4302456 (-) |
| G107755 | NA | other | upstream | 919630 | 4375922 ~ 4376423 (-) |
