G106522


Basic Information

Item Value
gene id G106522
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3544715 ~ 3549069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120485
ggttttctatggagtagtattctcctgggggttttctatggagtagtattctcctggtggttttctatggagtagtattctcctggtggttttctatggagtggtattctcctgggggttttctatggagtagtattctcctgctggttttctatggagtagtattctcctggtggttttctatggagtagtattctcctggtgcttttctatggagtagtattctcctggtggttttctatggagtagtattctcctggtggttttctatggagtagtattctcctgggggttttctatggagtagtattctcctgggggttttctatggagtagtattctcctgggggttttctatggagtagtattctcctggtggttttctatagagtagtattctcctgggggttttctatagagtagtattctcctggtggttttctatggagtagtattctcctgggGGTGGGGACTCTACTATAGACTGACAGTGACCTAACAGAGGAAGTTGGCCTTGTAAGGAGTTGTAACGAACCTCAACTATAACTGAGTTCCAAGCCTCTATTCAAGGTTGTCCCAAAGCAGAGTGGGTGAGGAGCTACATTGAGGGATTGAGGTTTAATTAGACCCTCTGAAAGccactttttatttaacctttatttaaccaggtaagtcagttaagaacaaattcttatttacaattacagacagtgggttaactgccttgttcaggggcagaacgacagatttttaccttgtcagctcagggattcgatctagcaacctttcggttactactATAGACTGACAGTATAGActgacactctaaccactaggctacctgccgccacctTGGACTGAGCCAGGATGGTTTGTGATCAGGGTTAGGGCTCCCCATCATGACCAATAGACTCCAGGGGTGAACACCAAGGCCTGCTCATGTGGTCAACCTTGTCTGAACCTGTAGTCTTCTGGACCAACCTCTCCCCTGACCATAATGTCAGGAGGTTTTATGACTACTATAATAGCAGTATAATATCCTCAGTCATCTAGAAAGCATATCCACATACACACAGATGAGTTTTCAACTAGTAAGAGAATAGTTTGATCAAGGCTTATGTACTGTTACCAAAGAGGAAGTCAGAGAGGAACTCTCTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTGACCTCCCAACAGGACTCTGGTAGTTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTGACCTCCCAACAGGGACTCTGGTAGTTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTGACCTCCCAACAGGACTCTGGTAGTTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTGACCTCCCAACAGGACTCTGGTAGTTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTGACCTCCCAACAGGACTCTGGTAGTTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTGACCTCCCAACAGGACTCTGGTAGTTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTGACCTCCCAACAGGACTCTGGTAGTTCAGCTGAGGTACTGACAGGACTGGTCTGTAGAACAGCCAGCCCAGTTACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120485 True 1741 lncRNA 0.47 3 3544715 3549069

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 122616 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 564522 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 566191 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1124094 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1366719 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 501714 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 516923 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 564053 4113122 ~ 4119742 (+)
deptor deptor coding downstream 687811 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 778914 4327983 ~ 4572381 (+)
G106520 NA non-coding upstream 7406 3536981 ~ 3537309 (+)
G106470 NA non-coding upstream 13113 3530964 ~ 3531602 (+)
G106468 NA non-coding upstream 17987 3525123 ~ 3526728 (+)
G106518 NA non-coding upstream 20498 3523954 ~ 3524217 (+)
G106478 NA non-coding upstream 86852 3457279 ~ 3457863 (+)
G106535 NA non-coding downstream 27011 3576080 ~ 3576784 (+)
G106543 NA non-coding downstream 42970 3592039 ~ 3593732 (+)
G106551 NA non-coding downstream 55477 3604546 ~ 3605227 (+)
G106555 NA non-coding downstream 60041 3609110 ~ 3609738 (+)
G106564 NA non-coding downstream 77457 3626526 ~ 3627642 (+)
G106253 cdkal other upstream 153682 3006312 ~ 3391033 (+)
G106240 NA other upstream 505240 2974823 ~ 3039475 (+)
G106122 NA other upstream 826190 2717961 ~ 2718525 (+)
G106019 NA other upstream 1016743 2520716 ~ 2527972 (+)
G106575 NA other downstream 90365 3639434 ~ 3800352 (+)
G106595 NA other downstream 127196 3676265 ~ 3677850 (+)
G106775 NA other downstream 478006 4027075 ~ 4027594 (+)
G106814 NA other downstream 588744 4137813 ~ 4138496 (+)
G107922 NA other downstream 1195099 4744168 ~ 4745586 (+)

Expression


Co-expression Network