G106543


Basic Information

Item Value
gene id G106543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3592039 ~ 3593732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120530
CCGTTGGTTTGAGCCTTTAGCCAAGACAGCAGTGTGGAAGCTGGGCTCTGACCTCTACTATGATTGGCTGGTTCCCTTGGTAGACcgaggcagagtgtgtgtgtgtgtgttagaatgtggTGGTTCTGCTCTCTCCGAGGGTTGCTCTAGGAGAGAAAACCTTGGCTCCTTTCTGTTTTACCACCAGAGAAACAGATGACAGCCGCTGGTAGGAAACGCACGGTGGCTGGCCTTGATGCTCCCCAGCTGAAATCAGCAGCACTCAGAGGCCGTGCAGAGACATGCTGAGACAACTCTTAGCCATTACATGAGGACATTATCACACTCTAAAGGAGAAGATCCACTGAACTGGACATCGATGGATTCTATGTACCATCCAATTCACTATCCTAAGTGACTGGTATTGAACTGACACTTCAATTGTATGAATGAATCGTCCACAACCCTCCCCTCTGTCTGCTCTGTAGTCAACTCTGAGAGACATTCTCCTTCCATTGTCCACAAACATTacatctcctccttcctctcattGGTTGACAGCTGTCAGTGAGGTCCTCTCAAGTGGAGTCAGTGTGGGAGTGGTCAGTTAACAGGTGTATAGCAGGGTTAATAGTGGAGTCAGTGTGGGAGTGGTCAGTTAACAGGTGTATAGCAGGGTTAATAGTGGAGTCAGTGTGGGAGTGGTCAGTTAACAGGTGTATAGCAGGGTTAATAGTGGAGTCAGTGTGGGAGTGGTCAGTGTGGGAGAGGTCAGTTAACAGACTGTCAGCTGGTGCTGATGGATGGAGAGGTGTGCTTCTCAGGACTAATTAAAGGCACCGACCTGTCGGCCAGccaagtcagtcagtcattcacccagtcaagtcagtcagtcagccagacagccgGGGCCACCGTGGGGAATGTCCCTTcctttcatcatcatcatcataccgtagacctgggttcaaatactatttgaaagtATTTCTAATACTTAAGCTGGGTATCATTGAGCTTGTCTTGGTGAAATGGAATCAGTCGAATAGTGGGAAAACCCACAAACCATCTGACACTCCAGACAGGCTAAAGAAAACGGTTAAAGCATTTTGAAATATTTCAAAATgacttgaacccaggtctggcctACACTTCCTCCTTCAGCTGTCACCTTCCAGTCGCCTGTCTTCAGGGATGACTCATTCATTATTACCAGAGCGGCTGGTCCtgttctcgtgtgtgtgtgtgtgtgtgtgtgtgtttagcaggGAATGGGATCTGTCATCATGTATGTTTCTAAAGGACTTGTTAAAGTAgcactttcctgcagtcaatgaccaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120530 True 1322 lncRNA 0.48 2 3592039 3593732

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 169940 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 611846 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 613515 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1171418 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1414043 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 457051 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 472260 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 519390 4113122 ~ 4119742 (+)
deptor deptor coding downstream 643148 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 734251 4327983 ~ 4572381 (+)
G106535 NA non-coding upstream 15255 3576080 ~ 3576784 (+)
G106522 NA non-coding upstream 42970 3544715 ~ 3549069 (+)
G106523 NA non-coding upstream 46911 3544479 ~ 3545128 (+)
G106520 NA non-coding upstream 54730 3536981 ~ 3537309 (+)
G106470 NA non-coding upstream 60437 3530964 ~ 3531602 (+)
G106551 NA non-coding downstream 10814 3604546 ~ 3605227 (+)
G106555 NA non-coding downstream 15378 3609110 ~ 3609738 (+)
G106564 NA non-coding downstream 32794 3626526 ~ 3627642 (+)
G106568 NA non-coding downstream 37892 3631624 ~ 3632148 (+)
G106572 NA non-coding downstream 41908 3635640 ~ 3636535 (+)
G106253 cdkal other upstream 201006 3006312 ~ 3391033 (+)
G106240 NA other upstream 552564 2974823 ~ 3039475 (+)
G106122 NA other upstream 873514 2717961 ~ 2718525 (+)
G106019 NA other upstream 1064067 2520716 ~ 2527972 (+)
G106575 NA other downstream 45702 3639434 ~ 3800352 (+)
G106595 NA other downstream 82533 3676265 ~ 3677850 (+)
G106775 NA other downstream 433343 4027075 ~ 4027594 (+)
G106814 NA other downstream 544081 4137813 ~ 4138496 (+)
G107922 NA other downstream 1150436 4744168 ~ 4745586 (+)

Expression


Co-expression Network