G106578


Basic Information

Item Value
gene id G106578
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3643415 ~ 3645104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120573
CTCTCTGACTGGGGCTCCTCTGCTCTGATACTCCTGCATCATCAGTCATCATAAAACTCTAGTACTGCTTCTGTCCTTAAACCAGCCGGAGTGGCTACAGGAAAAtacttgtgtgtatgtatgtgtgtgtatgtgtgtgtgctgttcctACGGTGCCTGACGAATGTGTGTGTCGCTGAGGTCCTATTAATAGCCCTGTGTACAGCTGGAAGTGTCAGCCTGCCGGGATGAGAATGGATTTTCTACAGCCAGCAACTCCTTCTACAGCCAGCAACTCCTTCTACAGCCAGCAACTCCTTCTACAGCCAGCAACTCCTTCTACAGCCAGCAGCTCTTTCTACAGCCAGCAACTCCTTCCACAGCCAGCAGCTCTTTCTACAGCCAGCAACTCCTTCTACAGCCAGCAACTCCTTCTACATCCAGCAACTCTTTCTACACACTTACACATACTTatacacacgcacaagcacacacaccctGAAGCTGGTAGGGTGGGttcgatacgatattatcacgatacttagttGCAAATACAATATGTATTACGATTCTCACGATTCTctaatatgtattgcgattcaatactgtgattttattgccaTCAGATTTTATTCCAAAAACATTTTGCTGAAcatacatctgctgcagaggggcaagagagagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120573 True 664 lncRNA 0.46 2 3643415 3645104

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 221316 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 663222 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 664891 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1222794 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1465419 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 405679 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 420888 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 468018 4113122 ~ 4119742 (+)
deptor deptor coding downstream 591776 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 682879 4327983 ~ 4572381 (+)
G106574 NA non-coding upstream 3237 3639038 ~ 3640178 (+)
G106573 NA non-coding upstream 4430 3636815 ~ 3638985 (+)
G106572 NA non-coding upstream 6880 3635640 ~ 3636535 (+)
G106568 NA non-coding upstream 11267 3631624 ~ 3632148 (+)
G106564 NA non-coding upstream 15773 3626526 ~ 3627642 (+)
G106579 NA non-coding downstream 383 3645487 ~ 3648411 (+)
G106590 NA non-coding downstream 17713 3662817 ~ 3663360 (+)
G106595 NA non-coding downstream 31161 3676265 ~ 3677850 (+)
G106597 NA non-coding downstream 36793 3681897 ~ 3682180 (+)
G106602 NA non-coding downstream 49627 3694731 ~ 3812426 (+)
G106253 cdkal other upstream 252382 3006312 ~ 3391033 (+)
G106240 NA other upstream 603940 2974823 ~ 3039475 (+)
G106122 NA other upstream 924890 2717961 ~ 2718525 (+)
G106019 NA other upstream 1115443 2520716 ~ 2527972 (+)
G106775 NA other downstream 381971 4027075 ~ 4027594 (+)
G106814 NA other downstream 492709 4137813 ~ 4138496 (+)
G107922 NA other downstream 1099064 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 1163635 4808739 ~ 4811575 (+)

Expression


Co-expression Network