G106579


Basic Information

Item Value
gene id G106579
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3645487 ~ 3648411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120575
AAGAAATAAACAATTTGTCTTCctgtttaaaaagaagatggagaactaGCTACgaaggataaatactggagttttggtgcaggtacagacaACTAGCTACgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactgtagttttggtgcaggtacagacaacaagctatgaaggataaatactggagttttggtgcaggtacagacaACTAGCTACgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagaaaACTAGCTATGAAGggtaaatactggagttttggtgcaggtatagACAACTAGC
>TU120576
AAGAAATAAACAATTTGTCTTCctgtttaaaaagaagatggagaactaGCTACgaaggataaatactggagttttggtgcagagGGACAAGATAGAGCCACGAGAAAACAAGTTATGATCAGTCATAGAAATAAACAATTTGTCTCCCagtttaaaaagaagatggagaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactggagttttggtgcaggtacagacaACTAGCACAAAAATAATAGTGCGATATTATCAAAACGATACATAGTATTGTAAAAATGTTTATCCAGACATGTAGCTGTATCGATTATCTTCCCCCATCACTAGTTCCCTGTGTGAGGAAGTGTAGCCTACTGATGccagatgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcagtggTAGGCAGGGTGGAGAGGGCCGTGTGGGCAGAGAGAGGGCGGTGTCACGGCTTCAAACAGCAGCCTGAGGGATTTACTACCCACAGGATCAACCACCTGATCCCTTCATATTCCCCACCCCTGTTCAACCCCCTTAAAACAACATGGCCGCCACTGCACCAGCAGACAGGGCCGGGGCCCAAATCATTCAAGCAGGCTGCTCAAGAAACCATTAGCCATAGTACTGCAAGGAGTCAAGAATCACTGTGTGGTAGGATGCTGATAGGTTAACACTAGTCTTTCTATAATCTTTACTCTGAGGACCTGAAACATTCCACAgccaactaccccccccccccccccccccctcgttcaACACAAAGGCAAAAGCCCTCTGAAGACCACGGGCCCCTTCCCCTGTCAGCCAGTGAGCTCAGGTGCTTGGCTAAAGTGGTGGAACTCCCAGGGTTTTAAAACAGAATGACCCCTGGACCAATAGGGAATGGGAACAAGACGAAAA
>TU120578
AAGAAATAAACAATTTGTCTTCctgtttaaaaagaagatggagaactaGCTACgaaggataaatactggagttttggtgcaggtacagacaACTAGCTACgaaggataaatactggagttttggtgcaggtacagacaactagctatgaaggataaatactgtagttttggtgcaggtacagacaacaagctatgaaggataaatactggagttttggtgcaggtacagacaACTAGCACAAAAATAATAGTGCGATATTATCAAAACGATACATAGTATTGTAAAAATGTTTATCCAGACATGTAGCTGTATCGATTATCTTCCCCCATCACTAGTTCCCTGTGTGAGGAAGTGTAGCCTACTGATGccagatgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcagtggTAGGCAGGGTGGAGAGGGCCGTGTGGGCAGAGAGAGGGCGGTGTCACGGCTTCAAACAGCAGCCTGAGGGATTTACTACCCACAGGATCAACCACCTGATCCCTTCATATTCCCCACCCCTGTTCAACCCCCTTAAAACAACATGGCCGCCACTGCACCAGCAGACAGGGCCGGGGCCCAAATCATTCAAGCAGGCTGCTCAAGAAACCATTAGCCATAGTACTGCAAGGAGTCAAGAATCACTGTGTGGTAGGATGCTGATAGGTTAACACTAGTCTTTCTATAATCTTTACTCTGAGGACCTGAAACATTCCACAgccaactaccccccccccccccccccccctcgttcaACACAAAGGCAAAAGCCCTCTGAAGACCACGGGCCCCTTCCCCTGTCAGCCAGTGAGCTCAGGTGCTTGGCTAAAGTGGTGGAACTCCCAGGGTTTTAAAACAGAATGACCCCTGGACCAATAGGGAATGGGAACAAGACGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120575 False 426 lncRNA 0.41 2 3645487 3646053
TU120576 False 1408 lncRNA 0.38 2 3645487 3648411
TU120578 True 954 lncRNA 0.47 3 3645487 3648411

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 223388 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 665294 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 666963 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1224866 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1467491 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 402372 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 417581 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 464711 4113122 ~ 4119742 (+)
deptor deptor coding downstream 588469 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 679572 4327983 ~ 4572381 (+)
G106578 NA non-coding upstream 383 3643415 ~ 3645104 (+)
G106574 NA non-coding upstream 5309 3639038 ~ 3640178 (+)
G106573 NA non-coding upstream 6502 3636815 ~ 3638985 (+)
G106572 NA non-coding upstream 8952 3635640 ~ 3636535 (+)
G106568 NA non-coding upstream 13339 3631624 ~ 3632148 (+)
G106590 NA non-coding downstream 14406 3662817 ~ 3663360 (+)
G106595 NA non-coding downstream 27854 3676265 ~ 3677850 (+)
G106597 NA non-coding downstream 33486 3681897 ~ 3682180 (+)
G106602 NA non-coding downstream 46320 3694731 ~ 3812426 (+)
G106611 NA non-coding downstream 56092 3704503 ~ 3704936 (+)
G106253 cdkal other upstream 254454 3006312 ~ 3391033 (+)
G106240 NA other upstream 606012 2974823 ~ 3039475 (+)
G106122 NA other upstream 926962 2717961 ~ 2718525 (+)
G106019 NA other upstream 1117515 2520716 ~ 2527972 (+)
G106775 NA other downstream 378664 4027075 ~ 4027594 (+)
G106814 NA other downstream 489402 4137813 ~ 4138496 (+)
G107922 NA other downstream 1095757 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 1160328 4808739 ~ 4811575 (+)

Expression


Co-expression Network