G106616


Basic Information

Item Value
gene id G106616
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3715211 ~ 3715836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120660
gcctggcacagctcctggtatatgtctgttacagctggatgagtcaacagacatggcacagctcctggtatatgtctgttacagctggatgagtcaacagatgtggcctggcacagctcctggtatatgtctgttacagctggatgagtcaacagacgtggtgggcctggcacagctcctggtatatgtccgttacgtttatggggggaggtcaattaaggaagacatcctcttctggaaaccaggacaacaggagaggatatttttaaagtactggacagctttgtgacatcaaatggactttggtggtcaagatgtgttggtatctgtactgttgGCGCAAaaaccatgacagggagacatagtggagtggtaacgtgtgTTCAAGCAGTTGCTCCCGTTGCCACTTGGgttcactgcagcatccaccgagaggctcttgggttcactgcagcatccacagagaggctcttgggttcactgcagcatccaccgagaggctcttgggttcactgcagcatccaccgagaggctcttgggttcactgcagcatccacagaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120660 True 562 lncRNA 0.51 2 3715211 3715836

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 293112 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 735018 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 736687 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1294590 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1537215 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 334947 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 350156 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 397286 4113122 ~ 4119742 (+)
deptor deptor coding downstream 521044 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 612147 4327983 ~ 4572381 (+)
G106611 NA non-coding upstream 10275 3704503 ~ 3704936 (+)
G106597 NA non-coding upstream 33031 3681897 ~ 3682180 (+)
G106595 NA non-coding upstream 37361 3676265 ~ 3677850 (+)
G106590 NA non-coding upstream 51851 3662817 ~ 3663360 (+)
G106579 NA non-coding upstream 66800 3645487 ~ 3648411 (+)
G106617 NA non-coding downstream 1166 3717002 ~ 3721341 (+)
G106625 NA non-coding downstream 10981 3726817 ~ 3728882 (+)
G106630 NA non-coding downstream 25753 3741589 ~ 3742013 (+)
G106642 NA non-coding downstream 48051 3763887 ~ 3764447 (+)
G106645 NA non-coding downstream 60279 3776115 ~ 3776747 (+)
G106253 cdkal other upstream 324178 3006312 ~ 3391033 (+)
G106240 NA other upstream 675736 2974823 ~ 3039475 (+)
G106122 NA other upstream 996686 2717961 ~ 2718525 (+)
G106775 NA other downstream 311239 4027075 ~ 4027594 (+)
G106814 NA other downstream 421977 4137813 ~ 4138496 (+)
G107922 NA other downstream 1028332 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 1092903 4808739 ~ 4811575 (+)
G108048 NA other downstream 1142075 4857911 ~ 4858274 (+)

Expression


Co-expression Network