G106659


Basic Information

Item Value
gene id G106659
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3819789 ~ 3822277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120724
TCAGAAGCAGCTCTCTGCTGAGTGATAGATTTAGAGGGGTTATTGTAGTTGTCAGAAGCAGCTCTCTCTGCTGAGTGATAGATTTAGAGGGTTATTCTAGTACTCAGAAGCAGCTCTCTGCTGAGGGATAGATTTAGAGGGGTTATTGTAGTTGTCAGAAGCAGCTCTCTGCTGAGGGATAGATTTAGAGGGGTTATTGTAGTTGTCAGAAGCAGCTCTCTCTGCTGAGTGATAGATTTAGAAGGGTTATTCTAGTACTCAGAAGCAGCTCTCTCTGCTGAGTGATAGATTTGGAGGGGTTATTCTAGTAGTCAGAAGCAGCTCTCTCTGCTGAGTGATAGATTTAGAGGGGTTATTCTAGTATTCAGAGGCAGCTCTCTGCTGAGTGATAGATTTAGAGGGGTTATTCTAGTAGTCAGAAGCAGCTCTCTGCTGAGTGATAGATTTAGAGGGGTTATTCTAGTACTCAGAAGCAGCTCTCTGCTGAGGGAAAGTGAGTGAGATTGAGCTCTGAAATGAAATGGTGGTCCTTCATGTCCAGTGACTCTGTAGTGAGCTGTATTACAGTGTTGAGCCATAGAGACAGGACCAAACAACTAACTGAAGAAAAAGGAAACGGTATCTAGGTGATCTGAAATACTTTAGATTCAGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCCATAGTAGTactcatatatacactaccggtctaGcgttttagagtggaggggctacagtagtactcatatatacactaccggtctagcgttttagagtggaggggctacagtagtactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctagcgttttagagtggaggggctacagtagtagtgggcaacgctgtcatcaaggcaaagactggctacattgaagaatctaaaatagaatGTATGTTTAACACTggtctggttactacatgattccatgtgtgttatttcatagtgttgatgtctttactattattc
>TU120726
GCTCTCTGCTGAGTGATAGATTTAGAGGGTTATTCTAGTACTCAGAAGCAGCTCTCTGCTGAGTGATAGATTTAGAGGGTTATTCTAGTAGTCAGAAGCAGCTCTCTGCTGAGTGATAGATTTAGAGGGGTTATTCTAGTAGTCAGAAGCAGCTCTCTGCTGAGTGATAGATTTAGAGGGGTTATTCTAGTACTCAGAAGCAGCTCTCTGCTGAGGGAAAGTGAGTGAGATTGAGCTCTGAAATGAAATGGTGGTCCTTCATGTCCAGTGACTCTGTAGTGAGCTGTATTACAGTGTTGAGCCATAGAGACAGGACCAAACAACTAACTGAAGAAAAAGGAAACGGTATCTAGGTGATCTGAAATACTTTAGATTCAGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCCATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGGGGGGCTATAGTAGTactcatatatacactaccggtctaGTGTTTTAGAGTGGAGGGGCCATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtcagaCGTTTTAGAGTGGAGGGGCCATAGTAGTactcatatatacactacc
>TU120723
TAGTAGTactcatatatacactaccagtctagCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCCATAGTAGTactcatatatacactaccggtctaGTGTTTTAGAGTGGAGGGGCCATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctaaCGTTTTAGAGTGGAGGGGCCATAGTAGTactcatatatacactaccagtctaacgttttagagtggaggggctacagtagtactcatatatacactaccggtctagcgttttagagtggaggggctacagtagtactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctaGCGTTTTAGAGTGGAGGGGCTATAGTAGTactcatatatacactaccggtctagcgttttagagtggaggggctacagtagtagtgggcaacgctgtcatcaaggcaaagactggctacattgaagaatctaaaatagaatGTATGTTTAACACTggtctggttactacatgattccatgtgtgttatttcatagtgttgatgtctttactattattc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120724 False 1173 lncRNA 0.43 3 3819789 3822277
TU120726 False 729 lncRNA 0.43 2 3820160 3821199
TU120723 True 726 lncRNA 0.38 2 3821336 3822277

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 397690 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 839596 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 841265 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1399168 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1641793 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 228506 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 243715 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 290845 4113122 ~ 4119742 (+)
deptor deptor coding downstream 414603 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 505706 4327983 ~ 4572381 (+)
G106656 NA non-coding upstream 3274 3812527 ~ 3816515 (+)
G106602 NA non-coding upstream 7363 3694731 ~ 3812426 (+)
G106654 NA non-coding upstream 11237 3806624 ~ 3808552 (+)
G106649 NA non-coding upstream 20947 3796226 ~ 3798842 (+)
G106647 NA non-coding upstream 38612 3779690 ~ 3781177 (+)
G106664 NA non-coding downstream 10553 3832830 ~ 3833410 (+)
G106671 NA non-coding downstream 17812 3840089 ~ 3840777 (+)
G106672 NA non-coding downstream 20615 3842892 ~ 3843577 (+)
G106680 NA non-coding downstream 34553 3856830 ~ 3857185 (+)
G106695 NA non-coding downstream 62526 3884803 ~ 3885407 (+)
G106575 NA other upstream 19437 3639434 ~ 3800352 (+)
G106595 NA other upstream 141939 3676265 ~ 3677850 (+)
G106253 cdkal other upstream 428756 3006312 ~ 3391033 (+)
G106240 NA other upstream 780314 2974823 ~ 3039475 (+)
G106775 NA other downstream 204798 4027075 ~ 4027594 (+)
G106814 NA other downstream 315536 4137813 ~ 4138496 (+)
G107922 NA other downstream 921891 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 986462 4808739 ~ 4811575 (+)
G108048 NA other downstream 1035634 4857911 ~ 4858274 (+)

Expression


Co-expression Network