G106710 (LOC106574253)


Basic Information

Item Value
gene id G106710
gene name LOC106574253
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3930637 ~ 3933532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120788
ACTGACAttaatgtttcattatttgaccAGGACAAAGCAGACACATTGTACAACCATAACGGATCAGTATTTTGGAAGTCAGCTGATAACCAGTGAACACACAAGCATACAGCATACAGCACAGTGGTTTACAGTAGTATATTCATGATCACTGTAGGCTATATGGTACTGTATCCAATCAGTGAGTTATTCAGATTGTGAAACCTCTTCTACATCACAGTGAGGTGATGAGGTCACCCCGTTTCTAACCGAGTTACAATCAGAGGCTTCCTGTAACTCCCTCATCTTCCCCTCTAGTCTCTCTGCCATCACACTCTGATGGGTCTTCCTCAGTATTTCAGGGAGTCTCCTCAGGTCTTCCTCTGAGGCATGCCTGATCCAGTCCTTCACCTGGCCCTGCAAGAGGCCTCTCTGGCCGGACTGGGAGAGGCTGCTGGCCgggtgctgctgctgctcctggTGCTCCTGCTCCTCTTCAGTGGCCATCAACCTCCAGACCAGCTTCCTCAGCTTCACCACTCTCATCTTGTGATGAGCGAAGAAGTCAGGAAGGAAGGTTCTGAGTAGTTTAAACTCACCTCCATCTTTCAGTTCTTCACAGGAAAGGGCGCAGAGGTTATCGTGCCAACACGTACCCCTGAGGACCGTCTTCCGCCCCAGTGACGCGCAATCGGTGTGATTTACGCACAGCGCGCGCGAAGAAGTGTTGTAGGAGAAGGAACCGTGAGGGCATTTTTCACACTCTGTGTCCGTCTCCGTCGTACCTCTCCGTTTCACCCCGTAGCCAGAAGGACACTCCGTGTGTCTGATACAGAAATCGGCGTCCCAGAAATATCCTCCTTTGCACTCACACACCCTGTCATTGAGAACCGAGCACTCCTCCTTGACCACCTGGTGCTCCCCACAGAACGTGCCGCAGTACAGACACTTGTGCAGGTAGTTCCAGTACTGAGTGTAGTGGCCTGATGGACATGGTGTACACACGGTCTGCGTGGTGGCGGTGCAGTGCGCAGACATGTGATGGCCAGGTGGACAGCGATGACAGGTGAGTAACTGGCCGGTGGAGGAGTCCAGGTGGTGATACGTGGCGGGGGTCTGACTTTGAAGAACCTCTTTCATTGCGCTACAGCTGAGATCAACCGACGCCAGCACTACGAGGATTGTGAACAACATGTTGATGTTGTCGCTTGTCCAGCTGTAAAAGGACTTG
>TU120791
CGTTATTCGATCTATCTGCAAAATAACGCTATTGCGCAAAGACGGAAATGGTGATATATCTGTCCATTCTGTTTCTTACCTCTCCGTTTCACCCCGTAGCCAGAAGGACACTCCGTGTGTCTGATACAGAAATCGGCGTCCCAGAAATATCCTCCTTTGCACTCACACACCCTGTCATTGAGAACCGAGCACTCCTCCTTGACCACCTGGTGCTCCCCACAGAACGTGCCGCAGTACAGACACTTGTGCAGGTAGTTCCAGTACTGAGTGTAGTGGCCTGATGGACATGGTGTACACACGGTCTGCGTGGTGGCGGTGCAGTGCGCAGACATGTGATGGCCAGGTGGACAGCGATGACAGGTGAGTAACTGGCCGGTGGAGGAGTCCAGGTGGTGATACGTGGCGGGGGTCTGACTTTGAAGAACCTCTTTCATTGCGCTACAGCTGAGATCAACCGACGCCAGCACTACGAGGATTGTGAACAACATGTTGATGTTGTCGCTTGTCCAGCTGTAAAAGGACTTG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120788 False 1210 lncRNA 0.52 5 3930637 3933532
TU120791 True 525 lncRNA 0.36 2 3932706 3933532

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 508538 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 950444 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 952113 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1510016 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1752641 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 117251 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 132460 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 179590 4113122 ~ 4119742 (+)
deptor deptor coding downstream 303348 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 394451 4327983 ~ 4572381 (+)
G106720 NA non-coding upstream 750 3928788 ~ 3929887 (+)
G106715 NA non-coding upstream 7640 3922174 ~ 3922997 (+)
G106703 NA non-coding upstream 23591 3906384 ~ 3907046 (+)
G106695 NA non-coding upstream 45230 3884803 ~ 3885407 (+)
G106680 NA non-coding upstream 73452 3856830 ~ 3857185 (+)
G106721 NA non-coding downstream 1462 3934994 ~ 3936469 (+)
G106734 NA non-coding downstream 26741 3960273 ~ 3960791 (+)
G106743 NA non-coding downstream 34070 3967602 ~ 3968660 (+)
G106744 NA non-coding downstream 34681 3968213 ~ 3969557 (+)
G106727 NA non-coding downstream 58572 3992104 ~ 3993273 (+)
G106575 NA other upstream 130285 3639434 ~ 3800352 (+)
G106595 NA other upstream 252787 3676265 ~ 3677850 (+)
G106253 cdkal other upstream 539604 3006312 ~ 3391033 (+)
G106240 NA other upstream 891162 2974823 ~ 3039475 (+)
G106775 NA other downstream 93543 4027075 ~ 4027594 (+)
G106814 NA other downstream 204281 4137813 ~ 4138496 (+)
G107922 NA other downstream 810636 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 875207 4808739 ~ 4811575 (+)
G108048 NA other downstream 924379 4857911 ~ 4858274 (+)

Expression


Co-expression Network