XLOC_020818 (AL928685.2)


Basic Information

Item Value
gene id XLOC_020818
gene name AL928685.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6300311 ~ 6316979 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041022
cggctaatctcgttgatcaccggctgcagctgagcttcatgtcgaacgcaccttttgatacatgcttcgaagcctcggcgcacaacgtcacatcactagtgGAAGCGTCGTTAAAATGATACACGTCTTTAATTTGCTATCATGGCTCTTGATTCTACGCGTCCTTGGTGTGACTGGTACAGATGTTCCGGTGTCAGTGATGGAAGAAGATTCAGTCATTCTACACACTGGTGTTGAAAATCTTACAGAAATTAAATGGTATTTTAATAAGACTCGCATCGCTCAACTCAATGGAAATGTCAGTTTTATCTGTACCGATAATCAGTGTATTAATGGCACTGAGAGATTCAGAGGCAGACTGAAGCTGGACCTtaagactggatctctgaccatcatgaAAATCAATAAAACACACTCTGGAGAATATCAACTAGTAGTTGATGGCATTGGCAATAGCAATGGGGGAAAGATCCTTATTATTACTGTCCAAGATAATCCCGCTGTTTATAATCAAGTAAAGAAAAACCCGGGAGAGTCTGTCACTTTCAATCCTGGCGTGAGAAGAGACATAATTGTTGTGATgaagtgttttttaaataatattctcATTGCTGAGATCACCGGAGGTCAGAGTCAGATCTGCAGTAATGTTCAGTGTAAAGAGAGATTCACAGACCGACTGAAACTGGACAGTGAAACTGCATCTCTGACCATCACGAACATCAGAAACACAGATTCTGGAAATTATACACTAGAGATTTTCATCAGAAACGACACACACTTCAGCATCACCAGAGAGAAGACGTTCAGCCTCACTGTCGTTTCTCCTCCACCTTCACGTCTGTCTGGAGGTGCAATAGCAGGAATAGTTATTCTGCTGGTTGTCGTCGCTGCTGTTGTTGGTGGTGTGATTTACTATCTTCGTCACAGAAGTGATAGAGCGGCACAGCCGCAGGAAGGTGTTGCTGATGATCCTAGTAGCCACCCTTTGAGGGACATGGGAGATTCTTAAATCAGACTCTGGCTGCTAATAAAACAATGCAGCAACACTTTGATACTGAAAGAAAAACTGGTGTGAATGCGCTATTGGAGAATCACGAAGAAACTTGGTGCTAAATCAACTGATTAGCTTCAGTttggaggaggtgttgaagaggATCAGTGGAGGATCAGCTCTCTGCTGGAGTGAGAAGGTGAATGAGCAGAgcttcagctct
>TCONS_00041023
ATGTTACGTTATGAAAATGTTTTAACTACTTTCAGTATCTATGatgtattgtatatttttattgtgtatttttcttCGTATTCAGGTGTGACTGGTACAGATGTTCCGGTGTCAGTGATGGAAGAAGATTCAGTCATTCTACACACTGGTGTTGAAAATCTTACAGAAATTAAATGGTATTTTAATAAGACTCGCATCGCTCAACTCAATGGAAATGTCAGTTTTATCTGTACCGATAATCAGTGTATTAATGGCACTGAGAGATTCAGAGGCAGACTGAAGCTGGACCTtaagactggatctctgaccatcatgaAAATCAATAAAACACACTCTGGAGAATATCAACTAGTAGTTGATGGCATTGGCAATAGCAATGGGGGAAAGATCCTTATTATTACTGTCCAAGATAATCCCGCTGTTTATAATCAAGTAAAGAAAAACCCGGGAGAGTCTGTCACTTTCAATCCTGGCGTGAGAAGAGACATAATTGTTGTGATgaagtgttttttaaataatattctcATTGCTGAGATCACCGGAGGTCAGAGTCAGATCTGCAGTAATGTTCAGTGTAAAGAGAGATTCACAGACCGACTGAAACTGGACAGTGAAACTGCATCTCTGACCATCACGAACATCAGAAACACAGATTCTGGAAATTATACACTAGAGATTTTCATCAGAAACGACACACACTTCAGCATCACCAGAGAGAAGACGTTCAGCCTCACTGTCGTTTCTCCTCCACCTTCACGTCTGTCTGGAGGTGCAATAGCAGGAATAGTTATTCTGCTGGTTGTCGTCGCTGCTGTTGTTGGTGGTGTGATTTACTATCTTCGTCACAGAAGTGATAGAGCGGCACAGCCGGTAAGTATAAAACACGGGATTTAACAAGATGTGGAATATTctgatcaaaaaaaaataaaactgtaag
>TCONS_00041024
accggctgcagctgagcttcatgtcgaacgcaccttttgatacatgcttcgaagcctcggcgcacaacgtcacatcactagtgGAAGCGTCGTTAAAATGATACACGTCTTTAATTTGCTATCATGGCTCTTGATTCTACGCGTCCTTGgagtgaCAAAATTACCCCTACAACAGAAGAAAAGAGCCAAGATGAAGGGAGCTAATCACAGAGCTGGAGGAAACACAGATTTTGAATCGTCCTCCACTCACTCTACCACTTTGTTTTTCCTTGCCAGACTTCATTCAAGAAAGAAGCCTGCTACAAGAGAGACAGCGGAAGGGAGCCTCCAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggggtcgccacagcgtaaggAACTCGATATTACTttgacatatgttttacacagccttccagctgcaacccagcactgtgaaacacccatacactctcgtatTCACAGACACTTCTACACTATgttcaaattcacctatagcacaagtgtttggactgtggtggaaacccacaccaaaacagggagaacatgcaaactccacacagaaacgccagcagacccagccgggactcataccagcaacctttttgctgtgaggtgacagtctgAGCCACTGGGTTGCCCCAGTGTAGTTATTAATAACCTCCAGATGTTTTACAGTttgattttgtaataataatgcacgtttacatttattgtaatatgtattttaaaatttattcacaatgtaatttatttttatgttatttataataacGTTAAATGTCATAAGAaagttataatttaatataatattataataaataattataataatgttaaaatataaataatacaaatttatttataatgtttttaatagtttatttttataaagagaAGTCTCAAAGTTTGTCTTTATTATAGAAAACTCATTGTTGAATGGCtaccactttacaataaggttgtatgtattagttaatgtatttactaacataataaacaatacatttattacagtattcattcatcTTTGCTAATGTTGGTAAATGGTAAaagttgttaattgtttattcatgttaactcgcaatgtattaactaatgttaacaagcataactgattttattaatgcattagtaaatgctgcaCATAAATTATGCTGTACAGGTATTGTTCATATTAGTTCATATTTAAACCATTAACATTACttataaaactactgtaaaatgtaactgttgtatgtatgttgttatattatatttgtatgtattttatatgtatttatttattttgttatatttgttaacGTATGTgattttgaaacatttcattaCAATCtaagtgtttaatgtatgttcgttatgcagtattataaataaatgttataatgatTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041022 False 1217 processed_transcript 0.43 5 6300311 6316979
TCONS_00041023 False 937 processed_transcript 0.39 3 6301699 6305063
TCONS_00041024 True 1441 processed_transcript 0.33 4 6313773 6316961

Neighbor

gene id symbol gene type direction distance location
XLOC_020817 si:ch211-274k16.9 coding downstream 12823 6284038 ~ 6287488 (-)
XLOC_020816 AL928685.1 coding downstream 18122 6273581 ~ 6282189 (-)
XLOC_020815 NA coding downstream 53572 6243742 ~ 6246739 (-)
XLOC_020814 AL928685.4 coding downstream 62918 6232552 ~ 6237393 (-)
XLOC_020813 si:ch211-274k16.2 coding downstream 71036 6211114 ~ 6229275 (-)
XLOC_020819 zgc:113298 coding upstream 25802 6342781 ~ 6362472 (-)
XLOC_020820 si:rp71-1i20.2 coding upstream 76248 6393227 ~ 6404910 (-)
XLOC_020821 NA coding upstream 80434 6397413 ~ 6399717 (-)
XLOC_020822 zgc:171699 coding upstream 90466 6407445 ~ 6420239 (-)
XLOC_020823 si:dkey-19a16.12 coding upstream 117693 6434672 ~ 6445861 (-)
XLOC_020811 BX004840.2 non-coding downstream 124052 6170371 ~ 6176259 (-)
XLOC_020810 NA non-coding downstream 132359 6154675 ~ 6167952 (-)
XLOC_020808 BX004840.1 non-coding downstream 212554 6085307 ~ 6087757 (-)
XLOC_020825 CR926879.1 non-coding upstream 159163 6476142 ~ 6476258 (-)
XLOC_020827 CR352226.4 non-coding upstream 198418 6515397 ~ 6520026 (-)
XLOC_020828 CR352226.5 non-coding upstream 210435 6527414 ~ 6529377 (-)
XLOC_020830 NA non-coding upstream 246667 6563646 ~ 6565961 (-)

Expression


Co-expression Network