G106727


Basic Information

Item Value
gene id G106727
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3992104 ~ 3993273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120814
taaccggccgtgactgggaggtccgtggggcgacgcacaattggcctagcgtcgtccgggttagggagggtttggccggtagggaaatccttgtctcatcgcgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctaaccaaggttgccaggtgcacggtgtttcctccgacacattggtgcggctggcttccgggttggatggcgctgtgttaagaagcagtgcggcttggttgggttgtgtatcggaggacgcatgactttcaaccttcgtctctcctgagcccgtacgggagttgtagcgatgagacaagatagtagctactaaacaattggataccatgaaattggggagaaaaaggggtaaaattcaacaacaaaaaactccctagtccttgcctatgacaagcatacccataacatgatccagccacaaccatgcttgaaaatatgaagagttgtattggattttccccaaacataatgatttgtattcaggacatacagtatatttctttgccacatttttagcagttttactttagtgccttactgcaaacaggatgcatgttttggaatatgttttattctgtacaggcttccttcttttcactctgtcatgtaggttagtattgtggagtaacgacaatgttgttgatccatcctcagttttatcctgtcacagccattaaactctgtaactgttttaaagtgacCACCAACCTCATGGTGAAAtacctgagcggtttccttcctctccggcaactgagttagacaggacacctgcatctttgtagtgactgggtgttttgatacaccatccaaagtataattaataacttcaccatgctcaaagggacattcaatgtctgcttttttacccatctaccaataggtgcccttctttgcgaggcatcgAAAAACcgccctggtctttgtggttgaatctatttttaaattcactgctcgattgaAGGACCGTATAGATAATTGTATGCGTGGTGtccagagatgaggtagtcattcaaaaatcacgttaaacactattattgcacacagagtgagtccacacaacttattatgtgacttgttaagcacatttttactcctgaacttttttaggcttgccataacaaaggagttaaATACGtattgattcaagac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120814 True 1170 lncRNA 0.45 1 3992104 3993273

Neighbor

gene id symbol gene type direction distance location
mboat1 LOC106573215 coding upstream 570005 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 1011911 2978786 ~ 2980193 (+)
LOC118937340 NA coding upstream 1013580 2978236 ~ 2978524 (+)
LOC118944030 NA coding upstream 1571483 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 1814108 2166121 ~ 2177996 (+)
colec10 LOC106591867 coding downstream 57510 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 72719 4065992 ~ 4085680 (+)
LOC110507036 LOC106594376 coding downstream 119849 4113122 ~ 4119742 (+)
deptor deptor coding downstream 243607 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 334710 4327983 ~ 4572381 (+)
G106744 NA non-coding upstream 22547 3968213 ~ 3969557 (+)
G106743 NA non-coding upstream 23444 3967602 ~ 3968660 (+)
G106734 NA non-coding upstream 31313 3960273 ~ 3960791 (+)
G106721 NA non-coding upstream 55635 3934994 ~ 3936469 (+)
G106710 LOC106574253 non-coding upstream 58572 3930637 ~ 3933532 (+)
G106755 NA non-coding downstream 60 3993333 ~ 3993610 (+)
G106761 NA non-coding downstream 14664 4007937 ~ 4008423 (+)
G106764 NA non-coding downstream 18866 4012139 ~ 4012539 (+)
G106773 NA non-coding downstream 32319 4025592 ~ 4025852 (+)
G106790 NA non-coding downstream 53434 4046707 ~ 4047624 (+)
G106575 NA other upstream 191752 3639434 ~ 3800352 (+)
G106595 NA other upstream 314254 3676265 ~ 3677850 (+)
G106253 cdkal other upstream 601071 3006312 ~ 3391033 (+)
G106240 NA other upstream 952629 2974823 ~ 3039475 (+)
G106775 NA other downstream 33802 4027075 ~ 4027594 (+)
G106814 NA other downstream 144540 4137813 ~ 4138496 (+)
G107922 NA other downstream 750895 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 815466 4808739 ~ 4811575 (+)
G108048 NA other downstream 864638 4857911 ~ 4858274 (+)

Expression


Co-expression Network