XLOC_020821


Basic Information

Item Value
gene id XLOC_020821
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6397413 ~ 6399717 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042322
ATTCTTTTCCTTAAACGTTCAACAGTTCATTATACTTTAACCTAAAAATAAATGTTGAGTTGGAGATAAAATCTCCAATGTGCCTTACAAATTTATGCAAGAAATGCTCATGGATGCATTTGGGACACATCATCAGTAATGTATCCTGGGATCATTGGGTGTTTCGGGTCTCTCAACATCACACACTGTCACCCAGCCGGGGTTGATCAAGTCCTGACTTGTGTCCCAGCAGCAGTCCACGGATCCACCCACTTAATCCACATCCACCTTGTGGCCTTCTCGGCGGCTTCGCTTGCGGATCGGATGGCCATTGCGTTTGTCCCTAAGCAACTGTTTTGTGAAGCCGAAGGGATTAGTGATGAAGGCCGCTCACTTCCTGGCTCTCTCTCGCCCCTGTCTCAGATATGCCACTCTGCCCTGTGTAGGATGATCAGCTTCTTTCTCAAAATGTTTTTCAACTCCGCTAATAGTTGCTTCTCCTCATCAGTAGCTTTCTTATACAGTTTCTTGAGGAAGAGAAGCTCCTGACGCAGATGATGTATCTGGGTAGCTCTATGGGTCGTAGTGTAGGAAGTAATGGTACACAGCAAATTTCTGGAGTTGAAAAATTAGGAGTTAGGCAAAAAAGTGTGAAAGAGTTaatttttttgagtttatttttaaactttaacacaATTTTGTGTTATGGATTACCCCTTGCTGTATTGTATTCTGGAGTTCATTCTCTGGTGTTCAGAAACGTGCTTTAACTCCTTACTGGAGTTAAATTTTTTGATAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCGTTGTGAGGTAGGTAAAAGTGCATTGTTATACAATTCTAAAAGCTTTttctaaatgtatatataaaagtgTGTTTTGCTGTAGCTGTTTCATTTTGTACTGTGAGGCTAGTGACTGCATGTGGCTAACTTAGCATAGCATGTTAGCTTTTCCAATGTGGctgttttgtgcagttttttaaaaaatgttgtggaTGTGAACAAGCTATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCATGAAATGTTTTGGATTGTATCATGATTTAGTCGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAAtaacatttatcttttttatttcaggCCACGATGCTGATAAAAGTGCAATTTGTAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGCGTaacagagtatttttttttttttattataataataataataataataataataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGGTAGgttatttaagaacatttttatagattttgAAAGTTGGTCTCATGACTCAGAGTGAAAGTGTGCATTTCAGAACCATTTGCTGAcacgtgttgttgttgttttttcatcagATTTGACTGTCCTGCAGCAAGGGGCTGTTGAAGTGCCCTCCTCCCCAAGTCTGACAGATACATTGTCTTTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTgtccaaaaaatgtaatttttttttaaacttccatATACATAGATATTATACcgtaaacattacaaaataacgttacaaaatgaatgcattttaaagtaaaaaaatagtataaacacagttattagattaagttttttttgttaaaaaaatattaattttggtTATCtttctaaatacttttttttttcttcgtttcagAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTAAGGAGtatgacaagatatttttttgcTGCTTCTGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTTACTAAGCCATTGGTTTTAGTTGGCACTAGCTGCTAACATAtattaattgtaaatgttttgctGTTAGATTTAATGCTTTGATGACAATTAATTTCAAAGTGTGTACATCGATGGAAATTCTAAATCTAATGTGTGGATTTGCATGAATAAAAGCAGTAAGTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042322 True 2305 lncRNA 0.35 1 6397413 6399717

Neighbor

gene id symbol gene type direction distance location
XLOC_020819 zgc:113298 coding downstream 34941 6342781 ~ 6362472 (-)
XLOC_020818 AL928685.2 coding downstream 80434 6300311 ~ 6316979 (-)
XLOC_020817 si:ch211-274k16.9 coding downstream 109925 6284038 ~ 6287488 (-)
XLOC_020816 AL928685.1 coding downstream 115224 6273581 ~ 6282189 (-)
XLOC_020815 NA coding downstream 150674 6243742 ~ 6246739 (-)
XLOC_020822 zgc:171699 coding upstream 7728 6407445 ~ 6420239 (-)
XLOC_020823 si:dkey-19a16.12 coding upstream 34955 6434672 ~ 6445861 (-)
XLOC_020824 zgc:172133 coding upstream 56286 6456003 ~ 6465060 (-)
XLOC_020825 CR926879.1 coding upstream 76425 6476142 ~ 6476258 (-)
XLOC_020826 si:dkey-19a16.7 coding upstream 87331 6487048 ~ 6499077 (-)
XLOC_020811 BX004840.2 non-coding downstream 221154 6170371 ~ 6176259 (-)
XLOC_020810 NA non-coding downstream 229461 6154675 ~ 6167952 (-)
XLOC_020827 CR352226.4 non-coding upstream 115680 6515397 ~ 6520026 (-)
XLOC_020828 CR352226.5 non-coding upstream 127697 6527414 ~ 6529377 (-)
XLOC_020830 NA non-coding upstream 163929 6563646 ~ 6565961 (-)
XLOC_020831 CR352226.2 non-coding upstream 187833 6587550 ~ 6601587 (-)

Expression


Co-expression Network