G106842


Basic Information

Item Value
gene id G106842
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4206035 ~ 4206534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120979
CTCCCTACCTCTTTGATCCAATGGCGGTACTGGTTCCACTCCCTACCTCTCTGATCCAGTGGAGGTACTGGTTCCACCCCCTACCTCTTTGATCCAATGGCGGTACTGGTTCACTCCAAAGGTCTTCTTCAGGTACAGACCATAGATGTAGCCAGAGATCCCCTTCAGCACCCACTCATCAGCCCTACAGAACACAGACCAGACAACAGGTAAGGCGATCGGGCCAGACGACACACAATGTCTTCATTTTAACCCGTTTGGCAGGCATTTAC

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120979 True 272 lncRNA 0.52 2 4206035 4206534

Neighbor

gene id symbol gene type direction distance location
LOC110507036 LOC106594376 coding upstream 86293 4113122 ~ 4119742 (+)
mal2 mal2 coding upstream 120355 4065992 ~ 4085680 (+)
colec10 LOC106591867 coding upstream 140428 4050783 ~ 4065607 (+)
mboat1 LOC106573215 coding upstream 783936 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 1225842 2978786 ~ 2980193 (+)
deptor deptor coding downstream 30346 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 121449 4327983 ~ 4572381 (+)
LOC110520696 mtbp coding downstream 396424 4602958 ~ 4654733 (+)
LOC118937359 NA coding downstream 427969 4634503 ~ 4636138 (+)
LOC118937361 NA coding downstream 529123 4735246 ~ 4737284 (+)
G106841 NA non-coding upstream 23 4205440 ~ 4206012 (+)
G106806 NA non-coding upstream 17002 4186818 ~ 4189033 (+)
G106831 NA non-coding upstream 37718 4167720 ~ 4168317 (+)
G106814 NA non-coding upstream 67539 4137813 ~ 4138496 (+)
G106797 NA non-coding upstream 109166 4095696 ~ 4096869 (+)
G106849 NA non-coding downstream 11841 4218375 ~ 4218891 (+)
G106851 NA non-coding downstream 13172 4219706 ~ 4220363 (+)
G106852 NA non-coding downstream 15000 4221534 ~ 4222247 (+)
G106855 NA non-coding downstream 15924 4222458 ~ 4223131 (+)
G106857 NA non-coding downstream 17582 4224116 ~ 4224594 (+)
G106775 NA other upstream 178441 4027075 ~ 4027594 (+)
G106575 NA other upstream 405683 3639434 ~ 3800352 (+)
G106595 NA other upstream 528185 3676265 ~ 3677850 (+)
G107922 NA other downstream 537634 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 602205 4808739 ~ 4811575 (+)
G108048 NA other downstream 651377 4857911 ~ 4858274 (+)
G108280 NA other downstream 929822 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 1089645 5296179 ~ 5299933 (+)

Expression


Co-expression Network