XLOC_020823 (si:dkey-19a16.12)


Basic Information

Item Value
gene id XLOC_020823
gene name si:dkey-19a16.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6434672 ~ 6445861 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041032
GTTTTTAAATAAGCTTTATATTACTTCATTGAGGCCACTCAGCTGTGAAGTAAAATGAGAGTGTTTATTTGGATCTTATGGAGTGTCATCTTCATCAGCGGTGTGTCTGATGCTGCTGCAGATGAAGTGTCAGTGATGGAGGGAGAATCTGCCACTTTGAACGCTGGAAttgtaaaaacacaaaaagacaGAATAAGATGGTATTTTAATGGCAGTCGCATCGCTGAACTCAATGGAGATCAGGTGAAGATCTGCGTAGATGATGTGTGTCCTGACAGATTTAGAGGCAGACTGCAGCTGGACAATACATCTGGATCTCTGATCGTCACAAACACAAGGAAGACAGACTCTGGACTGTATCAGCTGCAGATTAACAGCCGTAGAACAGAAAAGAAATTCATCTTGTCTGTCCAGGGTGCCCTTGGTGCTGATACACCTGAATCGTCAGTGTCTGTAATGGAGGGAGACTCAGTCACTCTGTGCACTGGTGTTCAAACAAACCAAAGCAACAGAATTAAGTGGTATTTTTATACTGATCGCATTGCTGAAATAATAGGCTATCAGCATAAAATCTGCACAGATGATACCTGTCCTCAGAGATTCAGGGACAGACTGAAGCTGGACAGTCAGACTGGGTCTCTGACCATCATGAAGGTCAGCACTGAGGACTCGGGACTTTATACATTCCTCCACCGTGGCAGAGAAAAGATCTTCAGGGTTGTTATTCTTGCATTAAAGAACTTGAAGCAGAAATCAGCGACAGAGGGAGAATCTATCACTTTAGACACTCCTATTAAAACAACTCCAAATGATGTGCTGAAGTGGTACTTTGGCGAGATTCTCCTTGCTGAATTGACTGGAGGTGCGAGTCAGATCTGTGAAGATGCTCAGTGTAAAGATggattcagagacagactgaagGTGAATCATTCATCTGGATCTCTGACCATAATGAACAGCAGTAAAGCAGATTCTGGAGAATATACACTACTGATCAACAGCAGCAGCTTCTACATCAATGGGAGCTTCACGGTCTCTGTTGCTTCTGTTTTAGGACTATCCTTAAGTACAGGAATTGGAATATGTGCTGGTGTGCTGCTGGTGCTGCTGACGGTTGGTGCTACAGCTTTTTACTTTAccataaaaatggtaaaaaaaaggtcaaaggATAAAGTAAAACCATTTACTTTACCATGTGACAATCGACCAAGAGATCAGGGAAAAAGCAAACAAGTGAATGGTGAGTATTAG
>TCONS_00041033
ATGATTGCTTTTGCTGCTGCAGGTGTGTCTGATGCTGCTGCAGATGAAGTGTCAGTGATGGAGGGAGAATCTGCCACTTTGAACGCTGGAAttgtaaaaacacaaaaagacaGAATAAGATGGTATTTTAATGGCAGTCGCATCGCTGAACTCAATGGAGATCAGGTGAAGATCTGCGTAGATGATGTGTGTCCTGACAGATTTAGAGGCAGACTGCAGCTGGACAATACATCTGGATCTCTGATCGTCACAAACACAAGGAAGACAGACTCTGGACTGTATCAGCTGCAGATTAACAGCCGTAGAACAGAAAAGAAATTCATCTTGTCTGTCCAGGGTGCCCTTGGTGCTGATACACCTGAATCGTCAGTGTCTGTAATGGAGGGAGACTCAGTCACTCTGTGCACTGGTGTTCAAACAAACCAAAGCAACAGAATTAAGTGGTATTTTTATACTGATCGCATTGCTGAAATAATAGGCTATCAGCATAAAATCTGCACAGATGATACCTGTCCTCAGAGATTCAGGGACAGACTGAAGCTGGACAGTCAGACTGGGTCTCTGACCATCATGAAGGTCAGCACTGAGGACTCGGGACTTTATACATTCCTCCACCGTGGCAGAGAAAAGATCTTCAGGGTTGTTATTCTTGGTGAGTCTTTTATGTCTTTTGACTTGTTGATCATACCACATTGacactttttattatttagtttaaaattagACCAGTTTTACAATTTCCATTTGTcattattgcaaaaaaacaaaaaacaaa

Function

symbol description
si:dkey-19a16.12 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-26 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000095940

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041032 False 1251 mRNA 0.42 5 6434672 6445861
TCONS_00041033 True 775 mRNA 0.42 2 6442226 6444807

Neighbor

gene id symbol gene type direction distance location
XLOC_020822 zgc:171699 coding downstream 14433 6407445 ~ 6420239 (-)
XLOC_020820 si:rp71-1i20.2 coding downstream 29762 6393227 ~ 6404910 (-)
XLOC_020821 NA coding downstream 34955 6397413 ~ 6399717 (-)
XLOC_020819 zgc:113298 coding downstream 72200 6342781 ~ 6362472 (-)
XLOC_020818 AL928685.2 coding downstream 117693 6300311 ~ 6316979 (-)
XLOC_020824 zgc:172133 coding upstream 10142 6456003 ~ 6465060 (-)
XLOC_020825 CR926879.1 coding upstream 30281 6476142 ~ 6476258 (-)
XLOC_020826 si:dkey-19a16.7 coding upstream 41187 6487048 ~ 6499077 (-)
XLOC_020827 CR352226.4 coding upstream 69536 6515397 ~ 6520026 (-)
XLOC_020828 CR352226.5 coding upstream 81553 6527414 ~ 6529377 (-)
XLOC_020816 AL928685.1 non-coding downstream 152483 6273581 ~ 6282189 (-)
XLOC_020815 NA non-coding downstream 187933 6243742 ~ 6246739 (-)
XLOC_020811 BX004840.2 non-coding downstream 258413 6170371 ~ 6176259 (-)
XLOC_020830 NA non-coding upstream 117785 6563646 ~ 6565961 (-)
XLOC_020831 CR352226.2 non-coding upstream 141689 6587550 ~ 6601587 (-)

Expression


Co-expression Network