G107551


Basic Information

Item Value
gene id G107551
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4249307 ~ 4249761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122022
AGTtgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatccttcATAGCTAGTtatctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatccttcatagcttgttgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatcaTTCATAGCTAGTTGTctatacctgcaccaaaactccagtat
>TU122024
AGTtgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatcaTTCATAGCTAGTTGTctatacctgcaccaaaactccagtatttatccttcatagcttgttgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatcaTTCATAGCTAGTTGTctatacctgcaccaaaactccagtat
>TU122025
AGTtgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatccttcatagcttgttgtctgtacctgcaccaaaactccagtatttatccttcatagcttgttgtctgtacctgcaccaaaactccagtatttatccttcatagctagttgtctgtacctgcaccaaaactccagtatttatcaTTCATAGCTAGTTGTctatacctgcaccaaaactccagtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122022 False 361 lncRNA 0.40 2 4249307 4249761
TU122024 False 314 lncRNA 0.39 2 4249307 4249761
TU122025 True 314 lncRNA 0.40 3 4249307 4249761

Neighbor

gene id symbol gene type direction distance location
dscc1 LOC106595460 coding downstream 12515 4227282 ~ 4236792 (-)
taf2 LOC106572977 coding downstream 26103 4170743 ~ 4223204 (-)
enpp2 LOC106573026 coding downstream 82283 4122310 ~ 4167024 (-)
LOC110520706 LOC106574239 coding downstream 261671 3940390 ~ 3987636 (-)
LOC110506163 LOC106574253 coding downstream 315687 3930634 ~ 3933620 (-)
mrpl13 LOC106606163 coding upstream 325676 4575437 ~ 4602797 (-)
sntb1 LOC106595750 coding upstream 412572 4662333 ~ 4740098 (-)
has2 LOC106592862 coding upstream 558952 4808713 ~ 4841402 (-)
LOC118936926 LOC106594463 coding upstream 817211 5066972 ~ 5068112 (-)
LOC118944032 NA coding upstream 893168 5142929 ~ 5164600 (-)
G107547 NA non-coding downstream 3592 4245503 ~ 4245715 (-)
G107546 NA non-coding downstream 4000 4245097 ~ 4245307 (-)
G107543 NA non-coding downstream 6573 4242054 ~ 4242734 (-)
G107542 NA non-coding downstream 9056 4239602 ~ 4240251 (-)
G107534 NA non-coding downstream 11236 4237575 ~ 4238071 (-)
G107556 NA non-coding upstream 11772 4261533 ~ 4262906 (-)
G107560 NA non-coding upstream 18440 4268201 ~ 4270053 (-)
G107562 NA non-coding upstream 24763 4274524 ~ 4276335 (-)
G107563 NA non-coding upstream 27120 4276881 ~ 4277334 (-)
G107564 NA non-coding upstream 27750 4277511 ~ 4278065 (-)
G107456 NA other downstream 256460 3991326 ~ 3992847 (-)
LOC110506994 carmil1 other downstream 473129 3705036 ~ 3924570 (-)
G106003 NA other downstream 1764184 2483860 ~ 2485123 (-)
G106001 NA other downstream 1765951 2482941 ~ 2483356 (-)
G105938 NA other downstream 1885776 2362999 ~ 2363531 (-)
G107574 NA other upstream 45664 4295425 ~ 4296815 (-)
G107576 NA other upstream 47684 4297445 ~ 4302456 (-)
G107755 NA other upstream 126161 4375922 ~ 4376423 (-)
G107843 NA other upstream 289474 4539235 ~ 4539623 (-)
G107849 NA other upstream 300552 4550313 ~ 4551965 (-)

Expression


Co-expression Network