G107560


Basic Information

Item Value
gene id G107560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4268201 ~ 4270053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122039
cgcctagtggttagagtgtagggacggcaggtatcACATCTGTAGGTTTGTGGAAGAGGTGTTCCCTCATTCCTTCCTCCTTCCAGGGAATCTCAACGATAAGAGACAGACCAGCTACCTGGAGCTCAGAGGAACTCAAAGTGCTGTACTTTCCTCTGTAACCTCTGGAACATTCCATGTATTAGGAGTCGGAAACCGTTTGATATAATTGCGTCGTCTGCCAGCTCCTGCTGAAGAGGATGTTAAAGGAAGGTAGTGGACGAGGTTGTTCATTTAAGCTGACTTTAGGTTCTCATTATGAGGCTTAGAACCTACTGACTGCCTTCACCCACATACTATACAGCACTCCCTCAGGTCCACAAACCTACTGACGGCCTTCACCCACATACGATACACTCTACAGCACTCCCTCAGGTCCACAAACCTACTGACGACCTTCACCCACATACTATACACTCTACCCTAACCCTGATGTTGATATGtgtaaaccctaaccctaagggTTGTAGTGGGATTCGGCCCCAGTGTGACAGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTCGGCCCCAGTGTGACAGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTTGGCCCCAGTGTGACTGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTCGGCCCCAGTGTGACAGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTTGGCCCCAGTCTGACAGTAgatagggagtagggagtaggggctAAGGGTTATAGTGGGATTCGGCCCCAGTCTGACAGTAgatagggagtagggagtaggggctAAGGGTTATAGTGGGATTCGGCCCCAGTCTGACAGTAGATAGTGTGGGTACAACAACtcctgatgtaaaaagggctttataaagacATTTGATTGCTAGACATTGAGGTTTACCAGATAGGAAGCTGGTGTTGCTTCCCTCTGGGTTCTGTTTGCGGAGACAGAAGGGGCTGTCATGGCTCTCTGGGATGGTGCGACAGCGCTCGTTCAGCAGCTCCATCAGACGTCGTCTCCTTCTGAAGTTCAGTCTGAACTGGTACAGCAGCCCTCCATCCACAAAGTGGTGCTTGTTGGtcactgtcagagagagaaacagaacaaaACGATTGTTTAGGATCGTTCAGTTACTGTTTCATATAACTGACTAAATCCTGGTAACTACAGTTACTAACTGTAAATCCTGTTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTAAATCCTGGTAACTACAGTAACTAACTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTATAGAACAGAAGGTAGTTCAGTTCCAAATCCTGTAACTCTTCAATTATTCCATTCAGACAGAACACCTCTGATGGTGCCTCCAATACCAGTAATCAGCTAAGTCTCTTAGGgttggacacaaacacacactctcccttCTCTTAGCTTGGGCCGTCATTGTGCCAACACTCTCACTTGGCTAACGCTCAGTACAGGGGGAGGCTCTGAATGCCCCTTAAAATCCCCAAATCCCTTGAAAGACATAAAACCAACTCTGACTGACTATACGACTAAAGCCATCCAGGAA
>TU122041
cgcctagtggttagagtgtagggacggcaggtatcACATCTGTAGGTTTGTGGAAGAGGTGTTCCCTCATTCCTTCCTCCTTCCAGGGAATCTCAACGATAAGAGACAGACCAGCTACCTGGAGCTCAGAGGAACTCAAAGTGCTGTACTTTCCTCTGTAACCTCTGGAACATTCCATGTATTAGGAGTCGGAAACCGTTTGATATAATTGCGTCGTCTGCCAGCTCCTGCTGAAGAGGATGTTAAAGGAAGGTAGTGGACGAGGTTGTTCATTTAAGCTGACTTTAGGTTCTCATTATGAGGCTTAGAACCTACTGACTGCCTTCACCCACATACTATACAGCACTCCCTCAGGTCCACAAACCTACTGACGGCCTTCACCCACATACGATACACTCTACAGCACTCCCTCAGGTCCACAAACCTACTGACGACCTTCACCCACATACTATACACTCTACCCTAACCCTGATGTTGATATGtgtaaaccctaaccctaagggTTGTAGTGGGATTCGGCCCCAGTGTGACAGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTCGGCCCCAGTGTGACAGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTTGGCCCCAGTGTGACTGTAGATAGGGAATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTTGGCCCCAGTCTGACAGTAgatagggagtagggagtaggggctAAGGGTTATAGTGGGATTCGGCCCCAGTCTGACAGTAgatagggagtagggagtaggggctAAGGGTTATAGTGGGATTCGGCCCCAGTCTGACAGTAGATAGTGTGGGTACAACAACtcctgatgtaaaaagggctttataaagacATTTGATTGCTAGACATTGAGGTTTACCAGATAGGAAGCTGGTGTTGCTTCCCTCTGGGTTCTGTTTGCGGAGACAGAAGGGGCTGTCATGGCTCTCTGGGATGGTGCGACAGCGCTCGTTCAGCAGCTCCATCAGACGTCGTCTCCTTCTGAAGTTCAGTCTGAACTGGTACAGCAGCCCTCCATCCACAAAGTGGTGCTTGTTGGtcactgtcagagagagaaacagaacaaaACGATTGTTTAGGATCGTTCAGTTACTGTTTCATATAACTGACTAAATCCTGGTAACTACAGTTACTAACTGTAAATCCTGTTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTAAATCCTGGTAACTACAGTAACTAACTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTATAGAACAGAAGGTAGTTCAGTTCCAAATCCTGTAACTCTTCAATTATTCCATTCAGACAGAACACCTCTGATGGTGCCTCCAATACCAGTAATCAGCTAAGTCTCTTAGGgttggacacaaacacacactctcccttCTCTTAGCTTGGGCCGTCATTGTGCCAACACTCTCACTTGGCTAACGCTCAGTACAGGGGGAGGCTCTGAATGCCCCTTAAAATCCCCAAATCCCTTGAAAGACATAAAACCAACTCTGACTGACTATACGACTAAAGCCATCCAGGAA
>TU122043
cgcctagtggttagagtgtagggacggcaggtatcACATCTGTAGGTTTGTGGAAGAGGTGTTCCCTCATTCCTTCCTCCTTCCAGGGAATCTCAACGATAAGAGACAGACCAGCTACCTGGAGCTCAGAGGAACTCAAAGTGCTGTACTTTCCTCTGTAACCTCTGGAACATTCCATGTATTAGGAGTCGGAAACCGTTTGATATAATTGCGTCGTCTGCCAGCTCCTGCTGAAGAGGATGTTAAAGGAAGGTAGTGGACGAGGTTGTTCATTTAAGCTGACTTTAGGTTCTCATTATGAGGCTTAGAACCTACTGACTGCCTTCACCCACATACTATACAGCACTCCCTCAGGTCCACAAACCTACTGACGGCCTTCACCCACATACGATACACTCTACAGCACTCCCTCAGGTCCACAAACCTACTGACGACCTTCACCCACATACTATACACTCTACCCTAACCCTGATGTTGATATGtgtaaaccctaaccctaagggTTGTAGTGGGATTCGGCCCCAGTGTGACAGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTCGGCCCCAGTGTGACAGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTTGGCCCCAGTGTGACTGTAGATAGGGAGTAGGGGCTAAGGGTTATAGTGGGATTCGGCCCCAGTCTGACAGTAgatagggagtagggagtaggggctAAGGGTTATAGTGGGATTCGGCCCCAGTCTGACAGTAgatagggagtagggagtaggggctAAGGGTTATAGTGGGATTCGGCCCCAGTCTGACAGTAGATAGTGTGGGTACAACAACtcctgatgtaaaaagggctttataaagacATTTGATTGCTAGACATTGAGGTTTACCAGATAGGAAGCTGGTGTTGCTTCCCTCTGGGTTCTGTTTGCGGAGACAGAAGGGGCTGTCATGGCTCTCTGGGATGGTGCGACAGCGCTCGTTCAGCAGCTCCATCAGACGTCGTCTCCTTCTGAAGTTCAGTCTGAACTGGTACAGCAGCCCTCCATCCACAAAGTGGTGCTTGTTGGtcactgtcagagagagaaacagaacaaaACGATTGTTTAGGATCGTTCAGTTACTGTTTCATATAACTGACTAAATCCTGGTAACTACAGTTACTAACTGTAAATCCTGTTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTAAATCCTGGTAACTACAGTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTACAGTAACTAACTGTAAATCCTGGTAACTATAGAACAGAAGGTAGTTCAGTTCCAAATCCTGTAACTCTTCAATTATTCCATTCAGACAGAACACCTCTGATGGTGCCTCCAATACCAGTAATCAGCTAAGTCTCTTAGGgttggacacaaacacacactctcccttCTCTTAGCTTGGGCCGTCATTGTGCCAACACTCTCACTTGGCTAACGCTCAGTACAGGGGGAGGCTCTGAATGCCCCTTAAAATCCCCAAATCCCTTGAAAGACATAAAACCAACTCTGACTGACTATACGACTAAAGCCATCCAGGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122039 False 1797 lncRNA 0.42 3 4268201 4270053
TU122041 False 1775 lncRNA 0.46 3 4268201 4270053
TU122043 True 1749 lncRNA 0.38 3 4268201 4270053

Neighbor

gene id symbol gene type direction distance location
dscc1 LOC106595460 coding downstream 31409 4227282 ~ 4236792 (-)
taf2 LOC106572977 coding downstream 44997 4170743 ~ 4223204 (-)
enpp2 LOC106573026 coding downstream 101177 4122310 ~ 4167024 (-)
LOC110520706 LOC106574239 coding downstream 280565 3940390 ~ 3987636 (-)
LOC110506163 LOC106574253 coding downstream 334581 3930634 ~ 3933620 (-)
mrpl13 LOC106606163 coding upstream 305384 4575437 ~ 4602797 (-)
sntb1 LOC106595750 coding upstream 392280 4662333 ~ 4740098 (-)
has2 LOC106592862 coding upstream 538660 4808713 ~ 4841402 (-)
LOC118936926 LOC106594463 coding upstream 796919 5066972 ~ 5068112 (-)
LOC118944032 NA coding upstream 872876 5142929 ~ 5164600 (-)
G107556 NA non-coding downstream 5295 4261533 ~ 4262906 (-)
G107551 NA non-coding downstream 18440 4249307 ~ 4249761 (-)
G107547 NA non-coding downstream 22486 4245503 ~ 4245715 (-)
G107546 NA non-coding downstream 22894 4245097 ~ 4245307 (-)
G107543 NA non-coding downstream 25467 4242054 ~ 4242734 (-)
G107562 NA non-coding upstream 4471 4274524 ~ 4276335 (-)
G107563 NA non-coding upstream 6828 4276881 ~ 4277334 (-)
G107564 NA non-coding upstream 7458 4277511 ~ 4278065 (-)
G107565 NA non-coding upstream 8106 4278159 ~ 4278476 (-)
G107566 NA non-coding upstream 8483 4278536 ~ 4278763 (-)
G107456 NA other downstream 275354 3991326 ~ 3992847 (-)
LOC110506994 carmil1 other downstream 492023 3705036 ~ 3924570 (-)
G106003 NA other downstream 1783078 2483860 ~ 2485123 (-)
G106001 NA other downstream 1784845 2482941 ~ 2483356 (-)
G105938 NA other downstream 1904670 2362999 ~ 2363531 (-)
G107574 NA other upstream 25372 4295425 ~ 4296815 (-)
G107576 NA other upstream 27392 4297445 ~ 4302456 (-)
G107755 NA other upstream 105869 4375922 ~ 4376423 (-)
G107843 NA other upstream 269182 4539235 ~ 4539623 (-)
G107849 NA other upstream 280260 4550313 ~ 4551965 (-)

Expression


Co-expression Network