G107562


Basic Information

Item Value
gene id G107562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4274524 ~ 4276335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122049
TTCGATAGAAACACAGTCTTCTATATAAGACTAGAGCCTGGATATCTAAAACACAGTCTTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACAGTCTTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACACAGTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACACAGTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACAGACTTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACAGTCTTCTTCTATACAAGACTAAAGCCTGGATATCTGAAACACAGTCTTCTTCTATGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTATGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTAGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGTACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAATAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAATAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGTACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAAACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCACATGATACTGTTACCATTTACCTAAACTGAGGATCCAAAACACTCCCAAGTTTTTTTCCATGTGTTCTGGATAGTCAGTAGTTCCTGACCAGAACCTCAGTCTGGGGAGGAGAGGGTATCAGCACATTGAAGACACACTGCTGTGCACAGGGCTCCTATTCACACTCTTACCCcactgtggtttgtgtaaggtcaCTCAGGGAGAATGGTGACCCTCTTACcggactgtgctgtgtgtgtgtgtgtgtgagagtgtattAAGGTCACTCAGGGAGAATAGAGACCCTCTTACcggactgtggtgtgtgtgtgtgtgtgtgtttgagagagtgtATTAAGGCCTCTTACCTGACTTTGGGTTACAGAGCACCGGGGGGCTGCTACTGAGGGTGGGACTGCTGCTATAGTAACCACTGCTGCCACAGCTGCTGCTCATGCTGCTACGACGGATACCCACTATCATCTTGATCTCTTTAGTAGGActcactgagagaggagagagacaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122049 True 1712 lncRNA 0.32 3 4274524 4276335

Neighbor

gene id symbol gene type direction distance location
dscc1 LOC106595460 coding downstream 37732 4227282 ~ 4236792 (-)
taf2 LOC106572977 coding downstream 51320 4170743 ~ 4223204 (-)
enpp2 LOC106573026 coding downstream 107500 4122310 ~ 4167024 (-)
LOC110520706 LOC106574239 coding downstream 286888 3940390 ~ 3987636 (-)
LOC110506163 LOC106574253 coding downstream 340904 3930634 ~ 3933620 (-)
mrpl13 LOC106606163 coding upstream 299102 4575437 ~ 4602797 (-)
sntb1 LOC106595750 coding upstream 385998 4662333 ~ 4740098 (-)
has2 LOC106592862 coding upstream 532378 4808713 ~ 4841402 (-)
LOC118936926 LOC106594463 coding upstream 790637 5066972 ~ 5068112 (-)
LOC118944032 NA coding upstream 866594 5142929 ~ 5164600 (-)
G107560 NA non-coding downstream 4471 4268201 ~ 4270053 (-)
G107556 NA non-coding downstream 11618 4261533 ~ 4262906 (-)
G107551 NA non-coding downstream 24763 4249307 ~ 4249761 (-)
G107547 NA non-coding downstream 28809 4245503 ~ 4245715 (-)
G107546 NA non-coding downstream 29217 4245097 ~ 4245307 (-)
G107563 NA non-coding upstream 546 4276881 ~ 4277334 (-)
G107564 NA non-coding upstream 1176 4277511 ~ 4278065 (-)
G107565 NA non-coding upstream 1824 4278159 ~ 4278476 (-)
G107566 NA non-coding upstream 2201 4278536 ~ 4278763 (-)
G107568 NA non-coding upstream 5434 4281769 ~ 4282850 (-)
G107456 NA other downstream 281677 3991326 ~ 3992847 (-)
LOC110506994 carmil1 other downstream 498346 3705036 ~ 3924570 (-)
G106003 NA other downstream 1789401 2483860 ~ 2485123 (-)
G106001 NA other downstream 1791168 2482941 ~ 2483356 (-)
G105938 NA other downstream 1910993 2362999 ~ 2363531 (-)
G107574 NA other upstream 19090 4295425 ~ 4296815 (-)
G107576 NA other upstream 21110 4297445 ~ 4302456 (-)
G107755 NA other upstream 99587 4375922 ~ 4376423 (-)
G107843 NA other upstream 262900 4539235 ~ 4539623 (-)
G107849 NA other upstream 273978 4550313 ~ 4551965 (-)

Expression


Co-expression Network