XLOC_020828 (CR352226.5)


Basic Information

Item Value
gene id XLOC_020828
gene name CR352226.5
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6527414 ~ 6529377 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041039
ggtccctaataataaaaaacggagcaattccaatagggcctacgcaccgtttcggtgctcggtccctaataaacagagcaattccaatagggcctacgcaccgtttcggtgctcggtccctaattattCTACATCACCTTTTTCAATGTAGAACTTAAATCTAAATGGGTCTCAGAGCCCTCAGACATCACAGTTAGTTCTTATcgctattttcaaaaaaatttttgaaATCCCAGAGTTTAGTCATCACAACAGCCTTTTTATATTACGTCAAAGCATTTCTCATTCCTGTCTATTGTAGGGAAATCATGGTTACATTTTTATTCCTCTTAAAGAGGTTGCAtaatcaaatgtatttatattaaatacatcACATAAATGTTTATATTGTCCAGGGTTCCCACGggtccttaaaaagtattaaaatgtcttaatatAAAATCTGGGAAATTAAGGTCTTAAATTGTCCTAAATTTACTGTTAAGTGGCTGTAGGTACTACATTTTCAGCCGGTGTGCTTAATGATGATAGGGAAGCACAGTGGTCCACCGTAAAACATCTAATAGTAGATCATTTTAGAATGTGTAAAACAGGAGAGAAATGACAGTCTCTGTGATTTATTAGCTTATTATGGTAGGTTGGCTACAGACGTTTATATCGGTCTGCACCTGTGTGCTGTCATTATGCGGTTGTCAAGGTGAGGTTCAAAATGAAAAGATGGGAAAGTACAAATTTTAACGACGTGGCAATGAGGCAATGTGTAAATTCTGCAAAAAGACCTTTTCGTCAGGGACCATGGGGCTTAAAGCCATGGAGTCGCAATTGAAATTAGGAAAGCAGCAGCGGTAGGTTGCGGCAGCTAGTCATAGCAGGTCCAGTTTAATCCCTGCATTGTTTGCAGCTAGACCTAACAATGTTACTAAGTCTAGAGtggaagatctttgcccgaacccgacaGACTTAATTTCTATCCTTTTAGACGGGGTCGATCCGTGCTTGGGCTTGTGCcataaatgaacagtcatgtgatgcatttcgattagcgggAAATttaaaggtgaaacaaatgatgacggagatatcaaaaaaagctaattttgacCGCGGTCATTTTCGCTGCCAAGGTATTttggcggtcgctcatacactgcgtattacggtagagcactAAACAGTTATGTACAGCGAGCTGACAGGGACGATGAAATGTATGTTCTTGACTGGtgaaagatgaacaaacaattctacccaaaacatgctaaattagccaGAACAGTAGTGCATCCCGGCCAGTATCAGCAGCAGTGAAAGAGTGTTCTGTGCTGCTCAGTGAGCTCAGGACTGCACTAAAGCCATTTACAagggatttaataatgttcctccacaaaaacatgTAGCCTAATCTTGATGAGCAAAGAattttcaaattataactaaatattaaaatgtaataataaaatcataatgcAGACAGAGTATATTGGCTAATGCTGGCATTAATCTTTTAATATTCATTGCCAAATACCAGTCATTATTAAtcttgtattttaatttaatttaagacttatttttattggtgtgttggccaatttaaaggctaagtgtatgtacctgGGACtctttagagtgctgagatgttacagaagatttattttatttttttgttccaatttccaagtgagctgtgtgcatgtgcataatTGACAAATGTCGCTTTTTAAAAGCTGTCATTCAATAAGTACTTGTCAGGCTCGGGCCCTGTCgggcctaacttttatggcccgattacagctctagttcagacgccccctcacagtcagctatagggttgtaacggtatgaatttttcacggtatgataatcgtctaaaacaataccacggtttgacggttt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0000785 chromatin cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100000

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041039 True 1893 lncRNA 0.39 2 6527414 6529377

Neighbor

gene id symbol gene type direction distance location
XLOC_020827 CR352226.4 coding downstream 7388 6515397 ~ 6520026 (-)
XLOC_020826 si:dkey-19a16.7 coding downstream 28337 6487048 ~ 6499077 (-)
XLOC_020825 CR926879.1 coding downstream 51156 6476142 ~ 6476258 (-)
XLOC_020824 zgc:172133 coding downstream 62354 6456003 ~ 6465060 (-)
XLOC_020823 si:dkey-19a16.12 coding downstream 81553 6434672 ~ 6445861 (-)
XLOC_020829 zgc:171490 coding upstream 17320 6546697 ~ 6562618 (-)
XLOC_020830 NA coding upstream 34269 6563646 ~ 6565961 (-)
XLOC_020831 CR352226.2 coding upstream 58173 6587550 ~ 6601587 (-)
XLOC_020832 si:ch211-209l18.4 coding upstream 103325 6632702 ~ 6651382 (-)
XLOC_020833 CR352226.3 coding upstream 132335 6661712 ~ 6662906 (-)
XLOC_020821 NA non-coding downstream 127697 6397413 ~ 6399717 (-)
XLOC_020818 AL928685.2 non-coding downstream 210435 6300311 ~ 6316979 (-)
XLOC_020816 AL928685.1 non-coding downstream 245225 6273581 ~ 6282189 (-)
XLOC_020834 NA non-coding upstream 167140 6696517 ~ 6711516 (-)
XLOC_020835 NA non-coding upstream 198163 6727540 ~ 6753026 (-)

Expression


Co-expression Network