XLOC_020829 (zgc:171490)


Basic Information

Item Value
gene id XLOC_020829
gene name zgc:171490
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6546697 ~ 6562618 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041040
ttttttacagtcattgactgaaacccctggaaaaaagtgcctgccgtTCAAGTCTGCAGACGCTCATGGTTTTCAGCAGACACTAGAAAGCGACATCTTTGTTTTTGTCTTCCAGACACAAGCTTATTGGAACAATAAACtccgtttattttattatttcaaacatGAAAATGAAGCTTTCCTATTATTTTCACATATCGATTTGGTGTTTCCTCAAGTCGACATTAGGTGTTTTTGGTGTGGAAGAAGGAAGAGTGTCTGTGATGGATGGAGATTCAGTCACTCTTTACACTGGTGTTAGAACAGGCCAACATGAAGGGATTACATGGTATTTTAATCTCATTCGCATTGCTCTGATAAATGGAGATCGGAGTAAGAGCTGTACAGATGTTCAGTGTAATCTAAATTTAAAAGCAAAGAATGAGAGATTTAGAAACAGACTGAAGCTGGATGAAGAAACTGGAGATCTGACCATCCTTAACATCAGAACCGCAGACGATACTGGAGATTATCAACTGATTATCCACagcaacagcagcaacaacaaagaCAACATTGAAAAGACCTTCAGGATTGCTGCTGATACTTCTGAAATGAAGAGTCCGTCAGTGAAGGAGGGAGAATCTGTCACTTTAGATCCTGGCGTAAACGCATATAATGAGATGAGCTGGTATTTCAGTGACATTCTCATTGCTCGACTCACTGGAAATCAGAGTCAGATCTGCACAAATGCTGAGTGTAAAGAGAGATTCACTGACAGACTGAAAACTGAAAACGATTCTCTGAATATCACTAACAGCAGAAGCACAGACTCTGGAGAATATAAACTGATGATCAACTGCAGCACATTCAGCATCATCAGGAAGCTTACTGTTAATGTCACCAATTCAGCTCATCCAGAAGTTATTGCATATGTGCTGGTGGCTGCTGTAtttgctgctgttgctgctgctgctgctgctgctgttgttgctgtAATCTTATGCTGGTGGCGTTATAATTCATCACAACAGAATGGAAACAGGACAGGAGAACAAAATACTACGaatgGTCCTGAAGTTGTGCCCCTTAATTCCAGACTGAATGGTGCCAATGGAACATCTAATGAGGCCAACTGTTCATTACTGCCTGCTGATAATGAAAATGGACTGGCAGCTAATGGCACACcacagtaaatgtttattttttaaaattattttaaggtatAGAAGGTGCATGGACGAAACATTAAACTTGTAATAAAGgagatttcattaattttctccTTTATTACAAGTGTTGCTAGAGTTCCTTATTTTTACTATATAATGGCATAAGGCCTTACAATTTCAGAGGGTTTCTAAATCTAACTGAGAAACAAACttgaaattaaagctgcaagcagcgatgatagggacctcgcaacCGGGCTCACCGctgcccggtgacc

Function

symbol description
zgc:171490 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-29 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000071643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041040 True 1429 mRNA 0.40 5 6546697 6562618

Neighbor

gene id symbol gene type direction distance location
XLOC_020828 CR352226.5 coding downstream 17320 6527414 ~ 6529377 (-)
XLOC_020827 CR352226.4 coding downstream 26671 6515397 ~ 6520026 (-)
XLOC_020826 si:dkey-19a16.7 coding downstream 47620 6487048 ~ 6499077 (-)
XLOC_020825 CR926879.1 coding downstream 70439 6476142 ~ 6476258 (-)
XLOC_020824 zgc:172133 coding downstream 81637 6456003 ~ 6465060 (-)
XLOC_020830 NA coding upstream 1028 6563646 ~ 6565961 (-)
XLOC_020831 CR352226.2 coding upstream 24932 6587550 ~ 6601587 (-)
XLOC_020832 si:ch211-209l18.4 coding upstream 70084 6632702 ~ 6651382 (-)
XLOC_020833 CR352226.3 coding upstream 99094 6661712 ~ 6662906 (-)
XLOC_020834 NA coding upstream 133899 6696517 ~ 6711516 (-)
XLOC_020821 NA non-coding downstream 146980 6397413 ~ 6399717 (-)
XLOC_020818 AL928685.2 non-coding downstream 229718 6300311 ~ 6316979 (-)
XLOC_020835 NA non-coding upstream 164922 6727540 ~ 6753026 (-)

Expression


Co-expression Network