G107862


Basic Information

Item Value
gene id G107862
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4588736 ~ 4590303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122495
ccacagagtgagggagggatacGAGGAATAGAACCAGCTTGTTAAAATGTTAGGAGAATATTGCAGGGGTATATAAAGTTGTCTACAGGGGAGACTCTTTACTATCTAGAGAGGGTAAGGTAGAGGAGATATTACCATATTGCTTAATCTAGTACATTCTATCAGATCCACCCAAGTGTCTCTAGGGGATAGGGGTAAATagaggggttgtttctggacagggtcATAGAGAACAGACCTGAGGGGTTTTGTACAAAGAAGAATCAATtatttagccagctaactttaatGAACAACCAGAAATATCTATTGTTTTTCAGTTTCATTAAGAAAGCTAAACTTATGTGTTTTTGGATGTTGGGTAAATTAGACCATGCCCGTTTTCAAGCATATACTTCTAAAAACAAAGGAGGGAAGTTAGCTGGCTGACTCATTGATCCTGCTCAGTAGTATCCCCGCCTGGACCTAACAGGATCTCCACTGGTCACCACTGGAGACATATCAAAGGTTCAATGATGGACCTCAACCTTGTTCTTCTCCAGAGCTGTAACCATGACAACCCTGATCCAACTGTCTTATATCAAATGTCTGTgttagtgtcccaaatggcaccctattccccagatAGTGCGCTAGGATACCCTATATAGTTCAATAGGATtccctatatagtgatctaggattccctgtatagtgatctaggattccctatatagttcaatAGGATTCCCTGTATAGTGATCTAGGAATCCTTATATATTGATCTAGGATTCCCTGTATAGTGATCTAGGATTCCCTGTATCGTGATCTAGGATTCCCTGTATCGTGATCTAGGATTCCCTGTATAGTGCGttaggattccctatatagtgcgctaggattccctatatagttcaattggattccctatatagttcaataggattccctgtatagtgatctaggattccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122495 True 952 lncRNA 0.41 3 4588736 4590303

Neighbor

gene id symbol gene type direction distance location
dscc1 LOC106595460 coding downstream 351944 4227282 ~ 4236792 (-)
taf2 LOC106572977 coding downstream 365532 4170743 ~ 4223204 (-)
enpp2 LOC106573026 coding downstream 421712 4122310 ~ 4167024 (-)
LOC110520706 LOC106574239 coding downstream 601100 3940390 ~ 3987636 (-)
LOC110506163 LOC106574253 coding downstream 655116 3930634 ~ 3933620 (-)
sntb1 LOC106595750 coding upstream 72030 4662333 ~ 4740098 (-)
has2 LOC106592862 coding upstream 218410 4808713 ~ 4841402 (-)
LOC118936926 LOC106594463 coding upstream 476669 5066972 ~ 5068112 (-)
LOC118944032 NA coding upstream 552626 5142929 ~ 5164600 (-)
derl1 derl1 coding upstream 590285 5180588 ~ 5195460 (-)
G107861 NA non-coding downstream 6318 4581547 ~ 4582418 (-)
G107858 NA non-coding downstream 11387 4576353 ~ 4577349 (-)
G107837 NA non-coding downstream 16428 4568710 ~ 4572308 (-)
G107851 NA non-coding downstream 34846 4553641 ~ 4553890 (-)
G107841 NA non-coding downstream 50900 4536899 ~ 4537836 (-)
G107873 NA non-coding upstream 22555 4612858 ~ 4615672 (-)
G107878 NA non-coding upstream 32441 4622744 ~ 4623624 (-)
G107885 NA non-coding upstream 44258 4634561 ~ 4636111 (-)
G107889 NA non-coding upstream 52989 4643292 ~ 4644087 (-)
G107892 NA non-coding upstream 59908 4650211 ~ 4653762 (-)
G107849 NA other downstream 36771 4550313 ~ 4551965 (-)
G107843 NA other downstream 49113 4539235 ~ 4539623 (-)
G107755 NA other downstream 212313 4375922 ~ 4376423 (-)
G107576 NA other downstream 288506 4297445 ~ 4302456 (-)
G107574 NA other downstream 291921 4295425 ~ 4296815 (-)
G108033 NA other upstream 252758 4843061 ~ 4844091 (-)
G108477 NA other upstream 650315 5240618 ~ 5241664 (-)
LOC110520858 LOC106606136 other upstream 832194 5422229 ~ 5430785 (-)
G109302 NA other upstream 1247374 5837677 ~ 5840273 (-)
atxn1b LOC106597954 other upstream 1271266 5860711 ~ 5875088 (-)

Expression


Co-expression Network