G107709


Basic Information

Item Value
gene id G107709
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4638476 ~ 4640436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122278
cttctccctggtccagtcctgtctctgtgttgaatcactaagctctctcttctccctggtccagacctgtctctgtgttgaatcactaagctctctcttctccctggtccagacctgtctctgtgttgaatcactaatctctctctcttttccctggtccagacctgtctctgtgttgaatcaCTAATCTCTCTCTTCTCCGTGGTTCagacctgtctctgtgttgaatcactaaggtctctctcttctccctggtccagacctgtctctgtgttgaatcactaatctctctcttctccctggtccagacctgtctctgtgttgaatcactaagctctctcttctccctggtccagacctgtctctgtgttgaatcactaagctctctcttctccctggtccagatctgtctctgtgttgaatcactaatctctctctcttctccctggtccagacctgtctctgtgttgaatcactaagctctctcttctccctggacctctgtgttgaatcactaagctctctctcttctccctggtccagacctgtctctgtgttgaatcactaagctctctcttctccctggtccagacctgtctctgtgttgaatcactaagctctctcttctccctggtccagacctgtctctgtgttgaatcactaagctctctcttctccctggtcCAGACCTGTCTCTGTTTTGAATCACTaagctctctcttctccctggtccagactaaccccctctgtctctgtgtcctggCTCACTGTctgacccctctgtctctgtgtcctggCTCACTGTctaacccctctgtctctgtgtcctggCTCACTGTCtgaccccctctgtctctgtgtcctggCTCACTGTctgacccctctgtctctgtgtcctggCTCACTGTCTGACCCCCTCTGTATCTGTGTCCTGGCTCACTGTCTGACCCCCTCTGTATCTGTGTCCTGGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122278 True 973 lncRNA 0.51 2 4638476 4640436

Neighbor

gene id symbol gene type direction distance location
LOC118937359 NA coding upstream 2338 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 66095 4327983 ~ 4572381 (+)
deptor deptor coding upstream 335940 4236880 ~ 4302536 (+)
LOC110507036 LOC106594376 coding upstream 518734 4113122 ~ 4119742 (+)
mal2 mal2 coding upstream 552796 4065992 ~ 4085680 (+)
LOC118937361 NA coding downstream 95221 4735246 ~ 4737284 (+)
LOC110506140 LOC106606110 coding downstream 507665 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 555495 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 587621 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 633720 5274156 ~ 5275584 (+)
G107703 NA non-coding upstream 22414 4615538 ~ 4616062 (+)
G107697 NA non-coding upstream 38963 4596186 ~ 4599513 (+)
G107693 NA non-coding upstream 56799 4581316 ~ 4581677 (+)
G107682 NA non-coding upstream 97198 4539636 ~ 4541278 (+)
G107680 NA non-coding upstream 111402 4526567 ~ 4527074 (+)
G107714 NA non-coding downstream 6344 4646780 ~ 4647797 (+)
G107896 LOC106595750 non-coding downstream 22088 4662524 ~ 4668610 (+)
G107898 NA non-coding downstream 65763 4706199 ~ 4707474 (+)
G107911 NA non-coding downstream 69653 4710089 ~ 4710939 (+)
G107912 NA non-coding downstream 71108 4711544 ~ 4722290 (+)
G106814 NA other upstream 499980 4137813 ~ 4138496 (+)
G106775 NA other upstream 610882 4027075 ~ 4027594 (+)
G106575 NA other upstream 838124 3639434 ~ 3800352 (+)
G106595 NA other upstream 960626 3676265 ~ 3677850 (+)
mboat1 LOC106573215 other upstream 1151347 3350582 ~ 3487129 (+)
G107922 NA other downstream 103732 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 168303 4808739 ~ 4811575 (+)
G108048 NA other downstream 217475 4857911 ~ 4858274 (+)
G108280 NA other downstream 495920 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 655743 5296179 ~ 5299933 (+)

Expression


Co-expression Network