G107893


Basic Information

Item Value
gene id G107893
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4653900 ~ 4660179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122557
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122559
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122560
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacaatgtAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGGATTAACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122562
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122565
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacaatgtAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122566
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTtaagacacaaacaaacaatgtAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGGATTAACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122567
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacaatgtAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122568
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122569
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTtaagacacaaacaaacaatgtAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacaatgtAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGGATTAACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122574
acattttattttatttcatcaaaTTGATGGCACAACTAAAAGAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTtaagacacaaacaaacaatgtAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGGATTAACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG
>TU122576
ctagAAGACTATAATATAACATgactataatagagtagaatagactagaagactatattataatatgactataatagagtagaatagactagAGTATAATAGAATAGACTATAATATAAGAGACTAAAATAGTGATATCTACAATTCTACCAATGCTTTACAACAAACAGAGACATACATGTTAAATAAACCATGTAAACACATCTAAAAGACAAACCTCCCAGTTTGTGGAATTTCCTATTAAAACAACATAAGAGAGAACTCATTTAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAAGTTCTTAAGACATAAACAAACAATGTAATTACAATGAATGGCTGCCTGGCAACTGACAGTCACTGAGGTTCTtaagacacaaacaaacatgctAATCACACGTTCACCTCCTGACAGACTGTACTGATGTTTCCTGTGGTGAAAGTACATTCCACTGATGGTTGCGGTTTGCCGTGACGATAAAACCAGTCGAAAACCACTAGGGATCGTTCTCTCGTCACTTAGAGGCCCGCTCCGTGACCCAGTCGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122557 False 624 lncRNA 0.38 2 4653900 4654724
TU122559 False 557 lncRNA 0.34 2 4653900 4654724
TU122560 False 691 lncRNA 0.39 3 4653900 4654724
TU122562 False 557 lncRNA 0.38 3 4653900 4654724
TU122565 False 691 lncRNA 0.39 2 4653900 4654724
TU122566 False 624 lncRNA 0.39 3 4653900 4654724
TU122567 False 624 lncRNA 0.41 3 4653900 4654724
TU122568 False 490 lncRNA 0.39 2 4653900 4654724
TU122569 False 758 lncRNA 0.39 2 4653900 4654724
TU122574 False 557 lncRNA 0.50 2 4653900 4654724
TU122576 True 573 lncRNA 0.36 4 4653900 4660179

Neighbor

gene id symbol gene type direction distance location
mrpl13 LOC106606163 coding downstream 51103 4575437 ~ 4602797 (-)
dscc1 LOC106595460 coding downstream 417108 4227282 ~ 4236792 (-)
taf2 LOC106572977 coding downstream 430696 4170743 ~ 4223204 (-)
enpp2 LOC106573026 coding downstream 486876 4122310 ~ 4167024 (-)
LOC110520706 LOC106574239 coding downstream 666264 3940390 ~ 3987636 (-)
sntb1 LOC106595750 coding upstream 2154 4662333 ~ 4740098 (-)
has2 LOC106592862 coding upstream 148534 4808713 ~ 4841402 (-)
LOC118936926 LOC106594463 coding upstream 406793 5066972 ~ 5068112 (-)
LOC118944032 NA coding upstream 482750 5142929 ~ 5164600 (-)
derl1 derl1 coding upstream 520409 5180588 ~ 5195460 (-)
G107892 NA non-coding downstream 138 4650211 ~ 4653762 (-)
G107889 NA non-coding downstream 9813 4643292 ~ 4644087 (-)
G107885 NA non-coding downstream 17789 4634561 ~ 4636111 (-)
G107878 NA non-coding downstream 30276 4622744 ~ 4623624 (-)
G107873 NA non-coding downstream 38228 4612858 ~ 4615672 (-)
G107971 NA non-coding upstream 51365 4711544 ~ 4752461 (-)
G108009 NA non-coding upstream 121212 4781391 ~ 4782457 (-)
G108012 NA non-coding upstream 130353 4790532 ~ 4792140 (-)
G108024 NA non-coding upstream 154584 4814763 ~ 4817127 (-)
G108026 NA non-coding upstream 160826 4821005 ~ 4821810 (-)
G107849 NA other downstream 101935 4550313 ~ 4551965 (-)
G107843 NA other downstream 114277 4539235 ~ 4539623 (-)
G107755 NA other downstream 277477 4375922 ~ 4376423 (-)
G107576 NA other downstream 353670 4297445 ~ 4302456 (-)
G107574 NA other downstream 357085 4295425 ~ 4296815 (-)
G108033 NA other upstream 182882 4843061 ~ 4844091 (-)
G108477 NA other upstream 580439 5240618 ~ 5241664 (-)
LOC110520858 LOC106606136 other upstream 762318 5422229 ~ 5430785 (-)
G109302 NA other upstream 1177498 5837677 ~ 5840273 (-)
atxn1b LOC106597954 other upstream 1201390 5860711 ~ 5875088 (-)

Expression


Co-expression Network