G107896 (LOC106595750)


Basic Information

Item Value
gene id G107896
gene name LOC106595750
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4662524 ~ 4668610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122583
ATCCAGAAATATGTCATTTATGTGCATCATTAACAGAGTTAAAATAAAACTAAGCCTTGAATTATAATAGCTGCCAAAGGCGTAGGACAATTCAAATTTTCAAGCAGCCTTCACAATCTTTTTCACCGTAACTTTTTCATTTAAGTTAACAGTAATCGCTGAATAATTTGCAGACAGAGATTGCCGAATAAACAATTAGCGTAGGATGGATGGATGCTAGATAGATCATACTTCCAGTATGTTTTTTAGTACCAAAACAATAGATTATTGTTCTTGTACAGCTTAACGACGATTTGAACAAAACAATTTCTTCTGTTGTAACTGATCTCTCGCTATGATGTCATCGGTAATGCATGTGTTTCTATAAATACACAAAACAACTCAttccagtttttttttaaacatgatcCATTCATTTTGAGCTGTTTGTGTGGACTTTGAATCAGGGTAGATCCTGTGTCTAGTTCACTGCACATCACAGTCCTTGTTCTCGTAGTTCAGTTATCAGCCATGTCCTCCTCTGTTCTGTACACTCCACTGTGGAACTCCGGGACACTCCACTCTAGAAGTCTGGAACTGTTCAGTCCTTGTGGTCCGTTGGTGGTAAACAGAACCTTTATGCTACCAGGCCGAGTCTGGCGATCTTTGCAGAGAGGAATGAGTGGAGGATGAAGACGATAGGCTTTGGGCACGAGTGGAGGTCCAGCTGCTGAacatagaacaggagagaatgtTAGATGTTACATTCTAGTTCTAATGGAAGAGCATCCTGACCCCGTCGTCGGAGGACATCTTGAGGCGTTCGAAGGGGTAGCAGAGGAGAGGTTTGGCTTGGTTCTGGTTCCCCTGGTCCACCTGGTCCTCCCCCTTCTGCTCAGCCAGGACAGAGAAGCCCTGCTCGTAGTGGATCACCAGCCTGCACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACACACATCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACATAGAGCCTGAAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTAAATACAGCCTGGAACAGGACAATAGAATGAGTAACTCCTGGCCCTTGTACATACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGAACACACAGCCTGGAACAGGACAATAGAATGGGTAACTCCTGGCCCTTGAACACACAGCCTGGAACAGGACAATATAATGAGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACATACAGCCTGGAACAAGACAATAGAATGGG
>TU122584
ATCCAGAAATATGTCATTTATGTGCATCATTAACAGAGTTAAAATAAAACTAAGCCTTGAATTATAATAGCTGCCAAAGGCGTAGGACAATTCAAATTTTCAAGCAGCCTTCACAATCTTTTTCACCGTAACTTTTTCATTTAAGTTAACAGTAATCGCTGAATAATTTGCAGACAGAGATTGCCGAATAAACAATTAGCGTAGGATGGATGGATGCTAGATAGATCATACTTCCAGTATGTTTTTTAGTACCAAAACAATAGATTATTGTTCTTGTACAGCTTAACGACGATTTGAACAAAACAATTTCTTCTGTTGTAACTGATCTCTCGCTATGATGTCATCGGTAATGCATGTGTTTCTATAAATACACAAAACAACTCAttccagtttttttttaaacatgatcCATTCATTTTGAGCTGTTTGTGTGGACTTTGAATCAGGGTAGATCCTGTGTCTAGTTCACTGCACATCACAGTCCTTGTTCTCGTAGTTCAGTTATCAGCCATGTCCTCCTCTGTTCTGTACACTCCACTGTGGAACTCCGGGACACTCCACTCTAGAAGTCTGGAACTGTTCAGTCCTTGTGGTCCGTTGGTGGTAAACAGAACCTTTATGCTACCAGGCCGAGTCTGGCGATCTTTGCAGAGAGGAATGAGTGGAGGATGAAGACGATAGGCTTTGGGCACGAGTGGAGGTCCAGCTGCTGAacAATTTCACCCTCTTTTCCACTGAAATCCAGGAAGAGCATCCTGACCCCGTCGTCGGAGGACATCTTGAGGCGTTCGAAGGGGTAGCAGAGGAGAGGTTTGGCTTGGTTCTGGTTCCCCTGGTCCACCTGGTCCTCCCCCTTCTGCTCAGCCAGGACAGAGAAGCCCTGCTCGTAGTGGATCACCAGCCTGCACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACACACATCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACATAGAGCCTGAAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTAAATACAGCCTGGAACAGGACAATAGAATGAGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGTAACTCCTGGCCCTTGAACACACAGCCTGGAACAGGACAATATAATGAGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACACACAGCCTGGAACAGGACAATAGAATGGGGTAACTCCTGGCCCTTGTACATACAGCCTGGAACAAGACAATAGAATGGG

Function

NR:

description
beta-1-syntrophin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122583 False 1414 lncRNA 0.45 2 4662524 4668610
TU122584 True 1350 lncRNA 0.46 3 4662524 4668610

Neighbor

gene id symbol gene type direction distance location
LOC110520696 mtbp coding upstream 7791 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 26386 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 90143 4327983 ~ 4572381 (+)
deptor deptor coding upstream 359988 4236880 ~ 4302536 (+)
LOC110507036 LOC106594376 coding upstream 542782 4113122 ~ 4119742 (+)
LOC118937361 NA coding downstream 67047 4735246 ~ 4737284 (+)
LOC110506140 LOC106606110 coding downstream 479491 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 527321 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 559447 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 605546 5274156 ~ 5275584 (+)
G107714 NA non-coding upstream 14727 4646780 ~ 4647797 (+)
G107709 NA non-coding upstream 22088 4638476 ~ 4640436 (+)
G107703 NA non-coding upstream 46462 4615538 ~ 4616062 (+)
G107697 NA non-coding upstream 63011 4596186 ~ 4599513 (+)
G107693 NA non-coding upstream 80847 4581316 ~ 4581677 (+)
G107898 NA non-coding downstream 37589 4706199 ~ 4707474 (+)
G107911 NA non-coding downstream 41479 4710089 ~ 4710939 (+)
G107912 NA non-coding downstream 42934 4711544 ~ 4722290 (+)
G107917 NA non-coding downstream 63347 4731957 ~ 4733848 (+)
G106814 NA other upstream 524028 4137813 ~ 4138496 (+)
G106775 NA other upstream 634930 4027075 ~ 4027594 (+)
G106575 NA other upstream 862172 3639434 ~ 3800352 (+)
G106595 NA other upstream 984674 3676265 ~ 3677850 (+)
mboat1 LOC106573215 other upstream 1175395 3350582 ~ 3487129 (+)
G107922 NA other downstream 75558 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 140129 4808739 ~ 4811575 (+)
G108048 NA other downstream 189301 4857911 ~ 4858274 (+)
G108280 NA other downstream 467746 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 627569 5296179 ~ 5299933 (+)

Expression


Co-expression Network