G107898


Basic Information

Item Value
gene id G107898
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4706199 ~ 4707474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122586
TAATAAGAGAGTGATGAAAGAGGATttagaggaggacgaggagggggGAAAACCTGGAGTCACGCAGGGAAAAGTCACCTGGGATCAATAGCTGCTGTACTGTATAGAAGGAACACTCTTCTGTTGGAAACTACTGCATCAGCTATACTGTATGAGGTTCCAAGAATGCTTGGCTCACTATCGTATAACTGCCTCACAAACATCACATATGAGTTATTATCAGAAGGTGGGCCGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGGCCGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCCGTGAAGGCATATTATAGATCTGATTCACAAACATCACATATGAGTTATTATCAGAAGGTGGTCTGTGAAGGAATATTacagatCTGATTAAAGGTGAGCAAGTTTCTTTCATGTGTTTTCCTGCACCAACATTCAATAAAGTACAGAGTAGATCCTACCttctcagccagccagcccaggTGTCTGATCTCTCTGCTCCCTGCGATTCCTGTTCTTCCCGTGTGCTCTTTGACCTCTGTGATGACCTTGTTGATGAGGTCAGAGGTCGCCGACTGCATGACCTCGAACCAGGCCTGGGCCGAGGCTGCGTCTCTACACCGTAACACCACCGTGTGCTTGGCGTCCGGAGAGTGCAGCTCCAACTGC

Function

NR:

description
PREDICTED: beta-1-syntrophin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122586 True 983 lncRNA 0.40 4 4706199 4707474

Neighbor

gene id symbol gene type direction distance location
LOC110520696 mtbp coding upstream 51466 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 70061 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 133818 4327983 ~ 4572381 (+)
deptor deptor coding upstream 403663 4236880 ~ 4302536 (+)
LOC110507036 LOC106594376 coding upstream 586457 4113122 ~ 4119742 (+)
LOC118937361 NA coding downstream 28183 4735246 ~ 4737284 (+)
LOC110506140 LOC106606110 coding downstream 440627 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 488457 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 520583 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 566682 5274156 ~ 5275584 (+)
G107896 LOC106595750 non-coding upstream 37589 4662524 ~ 4668610 (+)
G107714 NA non-coding upstream 58402 4646780 ~ 4647797 (+)
G107709 NA non-coding upstream 65763 4638476 ~ 4640436 (+)
G107703 NA non-coding upstream 90137 4615538 ~ 4616062 (+)
G107697 NA non-coding upstream 106686 4596186 ~ 4599513 (+)
G107911 NA non-coding downstream 2615 4710089 ~ 4710939 (+)
G107912 NA non-coding downstream 4070 4711544 ~ 4722290 (+)
G107917 NA non-coding downstream 24483 4731957 ~ 4733848 (+)
G107932 NA non-coding downstream 55817 4763291 ~ 4764472 (+)
G106814 NA other upstream 567703 4137813 ~ 4138496 (+)
G106775 NA other upstream 678605 4027075 ~ 4027594 (+)
G106575 NA other upstream 905847 3639434 ~ 3800352 (+)
G106595 NA other upstream 1028349 3676265 ~ 3677850 (+)
mboat1 LOC106573215 other upstream 1219070 3350582 ~ 3487129 (+)
G107922 NA other downstream 36694 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 101265 4808739 ~ 4811575 (+)
G108048 NA other downstream 150437 4857911 ~ 4858274 (+)
G108280 NA other downstream 428882 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 588705 5296179 ~ 5299933 (+)

Expression


Co-expression Network