G107912


Basic Information

Item Value
gene id G107912
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4711544 ~ 4722290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122611
ctgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtttaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactatttaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggtctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactatataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaagaccaggtctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaagaccaggcctgtctaaataaCTGTATAAcgaccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaatgcCAGGCCTGTCTaactgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtttAAATGACTgtctaaataccaggcctgtcgaaatgactgtataaataccaggcctgtctaaatgactgtataaagaccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtctaaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggtctgtctaaatgactgtataaataccaggcctgtctaaataccaggcctgtctaaataccaggcctgtctaaataccAGGCCtttctaaatgactgtataaataccaggcctgtctaaataccaggcctgtctaaataccaggcctgtctaaataccaggcctgtctaaataccaggcctgtctaaataccaggtctgtctaaatgactgtataaataccaggcctgtctaaataccaggcctgtctaaataccaggcctgtctaaataccaggcctgtctaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggtctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaagaccaggtctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtatgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaatgccaggcctgtctaaatgactgtataaagaccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaagaccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtctaaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaataccaggcctgtctaaatgactgtataaatac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106603920 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122611 True 3031 lncRNA 0.43 5 4711544 4722290

Neighbor

gene id symbol gene type direction distance location
LOC110520696 mtbp coding upstream 56811 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 75406 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 139163 4327983 ~ 4572381 (+)
deptor deptor coding upstream 409008 4236880 ~ 4302536 (+)
LOC110507036 LOC106594376 coding upstream 591802 4113122 ~ 4119742 (+)
LOC118937361 NA coding downstream 13367 4735246 ~ 4737284 (+)
LOC110506140 LOC106606110 coding downstream 425811 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 473641 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 505767 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 551866 5274156 ~ 5275584 (+)
G107911 NA non-coding upstream 605 4710089 ~ 4710939 (+)
G107898 NA non-coding upstream 4070 4706199 ~ 4707474 (+)
G107896 LOC106595750 non-coding upstream 42934 4662524 ~ 4668610 (+)
G107714 NA non-coding upstream 63747 4646780 ~ 4647797 (+)
G107709 NA non-coding upstream 71108 4638476 ~ 4640436 (+)
G107917 NA non-coding downstream 9667 4731957 ~ 4733848 (+)
G107932 NA non-coding downstream 41001 4763291 ~ 4764472 (+)
G107942 NA non-coding downstream 62341 4784631 ~ 4785544 (+)
G107958 NA non-coding downstream 97443 4819733 ~ 4820296 (+)
G106814 NA other upstream 573048 4137813 ~ 4138496 (+)
G106775 NA other upstream 683950 4027075 ~ 4027594 (+)
G106575 NA other upstream 911192 3639434 ~ 3800352 (+)
G106595 NA other upstream 1033694 3676265 ~ 3677850 (+)
mboat1 LOC106573215 other upstream 1224415 3350582 ~ 3487129 (+)
G107922 NA other downstream 21878 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 86449 4808739 ~ 4811575 (+)
G108048 NA other downstream 135621 4857911 ~ 4858274 (+)
G108280 NA other downstream 414066 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 573889 5296179 ~ 5299933 (+)

Expression


Co-expression Network