G107917



Basic Information


Item Value
gene id G107917
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4731957 ~ 4733848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU122620
gcccaaatgggttttgtgggtagttgttttctgtgttgtgtatttgcaccttgcagaactgttcgtttgttgtttttgttcaagtGTTGGTATTTATTAAACCTATTATGAATACTTACCCACgatgcaccttggtcctcttctccttctcccgacgacaTTCGTTACATCGTTTTTTGCTACAAAAGACTAGAGCTCAAACTGAATCTGAATAATTAACTCGTGTAAGATTTCTTTTTTGATAATTAATGTATTTGCAAACATACAGCAGGAGAGAATAATGACTGCATTGAAATAGAAATAACATCTAAAAATGTATCATGGTTTGGTCGTGTTCTTACTCATCGACCACATTGTCCTGTTAATTCATGTGGTTTGGGCCGTACGTCTCTACTCCATCCTGCTTGTTCGTAGAAAAACGGTCCGAATGAGCTTTCTGAATGAATCAACGTCACCATAGAAACCCAGCTGGTAGAAACCCCAAGTCATTGAGAGAATCTCAACCTAATGGTTGGGTGCAAGTCATTTCTTCTTCAGTTATTATCCATACAATGGAAGCCATTATAGAAGCCGGCATGTCTCTGAATTCTGAAATAACATTAAATCTATCTGCCCTATTGTCAGGTGTATTAATAACCAAGTCTTTGTGTTGTCAGCCTGTTAACTAGACACAGCCATTAGAGCTAGTTACATGTATTAACGTGGGAACAGAATGGAGAGCTTTGTTAGCTGCACTTATTGAGCCGAGAGAAGAAAATGGCTAATTTGACGTGAGTAACTTCTGGATGAATAAAACAACCAGGAACAAAAGGGGACTTTTTTTGATGAGACTTTAATTgcagaatagaatggaactcTTGTTTTTACCTCCTCTGAATGGGCAGGTAGATACTGCTCCAGAACAAAACACAAAATACACAGAGGTCTACAAGGTATATTTTCCCCCTCTGCCGCCTGAAAAGGTCTGATGTTATCAAAGCAAGAACAGGTACTTGAACGCCCGGTTCAATGGACTACAGTTTATATCAACTTTAGCAGAAATATTTGTAAGGACCgtttggtggaagaaggtgaggaccaggATGCAGCGTGGCAaagtgttcatgtttttaaaaccgtaatgaacactgaacaaaacaaataaaacgacaaaacaacaacagtcctgtgtggtgctgaaaaaacactgaacagaaaataaatcacccacaactcaagggtgaaaacaggctgcctaaagtACGGTTCTCAATcggggacaacgattgacagctgcctctgattgagaaccataccaggccaaacacagaaaataccaactcatagaaaaacaaacatagacaaccccacccaactcaagccctgaccatactaaaacaaagacataacaaaataactaagttcagaacgtgacaatattaGATCATATCACAGTGAGATTGACTGTGTTCATAGCATGACTTCTATGTTAAGAACAACAAGGTAGGGAGTCTGTGTTAAGAACAACAGGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTGTTAAGAACAACAAGGTGGGGAGTCTGTACTGGAGCTTTATGGGGAAAACAAGCAAAGGaaaatattcaaataatgatttcaGTCAAACAATCAAACAGTAAATTCACAGAGTGGATAACAGGAGTGTTGAGAAAACTGATGTATAAACTGTACTAGGGCCAGGAGTAGATGGTTCACTCTGTCAtcacagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU122620 True 1836 lncRNA 0.44 2 4731957 4733848

Neighbor


gene id symbol gene type direction distance location
LOC110520696 mtbp coding upstream 77224 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 95819 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 159576 4327983 ~ 4572381 (+)
deptor deptor coding upstream 429421 4236880 ~ 4302536 (+)
LOC110507036 LOC106594376 coding upstream 612215 4113122 ~ 4119742 (+)
LOC118937361 NA coding downstream 1809 4735246 ~ 4737284 (+)
LOC110506140 LOC106606110 coding downstream 414253 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 462083 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 494209 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 540308 5274156 ~ 5275584 (+)
G107912 NA non-coding upstream 9667 4711544 ~ 4722290 (+)
G107911 NA non-coding upstream 21018 4710089 ~ 4710939 (+)
G107898 NA non-coding upstream 24483 4706199 ~ 4707474 (+)
G107896 LOC106595750 non-coding upstream 63347 4662524 ~ 4668610 (+)
G107714 NA non-coding upstream 84160 4646780 ~ 4647797 (+)
G107932 NA non-coding downstream 29443 4763291 ~ 4764472 (+)
G107942 NA non-coding downstream 50783 4784631 ~ 4785544 (+)
G107958 NA non-coding downstream 85885 4819733 ~ 4820296 (+)
G107965 NA non-coding downstream 103535 4837383 ~ 4837938 (+)
G106814 NA other upstream 593461 4137813 ~ 4138496 (+)
G106775 NA other upstream 704363 4027075 ~ 4027594 (+)
G106575 NA other upstream 931605 3639434 ~ 3800352 (+)
G106595 NA other upstream 1054107 3676265 ~ 3677850 (+)
mboat1 LOC106573215 other upstream 1244828 3350582 ~ 3487129 (+)
G107922 NA other downstream 10320 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 74891 4808739 ~ 4811575 (+)
G108048 NA other downstream 124063 4857911 ~ 4858274 (+)
G108280 NA other downstream 402508 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 562331 5296179 ~ 5299933 (+)

Expression



Co-expression Network