G107932


Basic Information

Item Value
gene id G107932
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4763291 ~ 4764472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122648
ctagtaggtctacttgactgagtggatacatctccacgtgtggaggtgctggctccaccactatcactagtaggcctacttgactgggtggatacatctccacgtgtggaggtgctggctccaccactatcactagcaggcctaCTTGACTGGGTGGATAGTGTGTTTCTCTGACTGTAATGTTTCTGGTATTGAAGTGTGTTTCTCTGACTGTAATGTTTCTGGTATTGAAGTGTGTTTCTCTGACTGTAATGTTTCTGGTATTGAAGTGTGTTTCTCTGACTGTAATGTTTCTGGTATTGAAGTGTGTTTCTCTGACTGTAATGTTTCTGGTATTGAAGTCGTGTTTCTCTGACTGTAATGTTTCTGGTATTGAAGTCGTGTTTCTCTGACTGTAATGTTTCTGGTATTGAAGTCGTTCTTCAGAAGTTTTTCCATCACAGTCTTCATTTTTTCAACAGTGTTGTTTAGGCGGTTGTTCTTGTCCTCCAAGGTTGAtatcctctctcctgtgtgtgtaacTAGGATGTCGACTGAGTCCACTTTTGTTTTCAGGGCACACACTGTATGTTTTATTTCAGCCACGTCTTCACCCACTTTCGCAATTTTCTCTTCGAGATTTTTGTTCATTTTGCGAATCTCATTTAGAACTGGTCATCAGATTGTTCTTCTCCGCCATTTTCCTTGCTAGCTGCAGGTAGAGACAACGTTTTTTGTCAAAAGTGTCTGCTTATATGCGTTTCGAAGTCATTTTTCCATGTAACCGATATTTTGGACAATTAGTTAACAACGCGTTAACAATGTGTAACTAGACGTTGAATAATTAGCTAAAATATAGTTGGAGCTACACAG

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122648 True 852 lncRNA 0.46 2 4763291 4764472

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 26007 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 108558 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 127153 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 190910 4327983 ~ 4572381 (+)
deptor deptor coding upstream 460755 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 383629 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 431459 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 463585 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 509684 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 519222 5283628 ~ 5285741 (+)
G107917 NA non-coding upstream 29443 4731957 ~ 4733848 (+)
G107912 NA non-coding upstream 41001 4711544 ~ 4722290 (+)
G107911 NA non-coding upstream 52352 4710089 ~ 4710939 (+)
G107898 NA non-coding upstream 55817 4706199 ~ 4707474 (+)
G107942 NA non-coding downstream 20159 4784631 ~ 4785544 (+)
G107958 NA non-coding downstream 55261 4819733 ~ 4820296 (+)
G107965 NA non-coding downstream 72911 4837383 ~ 4837938 (+)
G107967 NA non-coding downstream 74932 4839404 ~ 4840100 (+)
G108031 NA non-coding downstream 77600 4842072 ~ 4842349 (+)
G107922 NA other upstream 17705 4744168 ~ 4745586 (+)
G106814 NA other upstream 624795 4137813 ~ 4138496 (+)
G106775 NA other upstream 735697 4027075 ~ 4027594 (+)
G106575 NA other upstream 962939 3639434 ~ 3800352 (+)
G106595 NA other upstream 1085441 3676265 ~ 3677850 (+)
G107955 LOC106592862 other downstream 44267 4808739 ~ 4811575 (+)
G108048 NA other downstream 93439 4857911 ~ 4858274 (+)
G108280 NA other downstream 371884 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 531707 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 742074 5480975 ~ 5542867 (+)

Expression


Co-expression Network