XLOC_020832 (si:ch211-209l18.4)


Basic Information

Item Value
gene id XLOC_020832
gene name si:ch211-209l18.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6632702 ~ 6651382 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041042
gacatcagagcgacGTATAGGCAAtgcggacacatttctaaccggcatgcatctgCGGTGATCACCAGTgatcgattctgcgcagattttgaCCATCTTAAACGAGCCTAAGATCTTTAACCAGAacgcaccgctttaagacagatttcgatcgatctgcgcagctctgcttgaagtcgaacgcacctattcaTTTCGCATGGTGTCCGACTTCTCATGTAGGCCTACATTTTTCAGCCGTCTTTTTACTGCAGCCCCCTGCTCTCATTTATGTTACGATGCAGTCAGGTCGAGGCGGATTGTTTTTCCAGTGAGGCGACAACAAACCAAAAAGCTTCTGGGATTCAGCACAGAAACTTTCTAAACGCTTATGCATCATATATTCggaattaattatttttggaaAAGTACTAAAATTATGCTGTTCTGTTGCTGGTGTTCGTTGCTGGTGTTCTGTTTCTGTTACGgTGCAATCAGTATTGATCCAGACACAGTGTCAGCGATGGAGGACGATTCAGTCACTCTACACATTGATACTGAAACAAACCAACACGACGATATTAGGTGGTATTTTAATGGCATTCGTATTGCTCAAATCTATAGAGATGGCATTTCTATTTGTCCAGGTGATAATTGTGAAAACGATACTGAGAGATTCAAAGACAGACTAAAGCTGGACAAACAGACTGGATATCTGACCATCATGAACATCGGAAACAAAGATGCTGGAAAATATATACTCAAGATTATACAGACGAATGACATTTACGACAGGATCTTCATTGTTACCTTCATTGGTGTGCCTGGTAATGTTTCAGCATCTGTGAAGGAGGGACATTCAGTCACCGTTAATACAGATGTTAAAAGAAACCAACAAAAATATGTTAAGTGGATTCTTAATAACATTACTATCGCTCAAATCAATGGAGATCTTGGTTATACTTGTACCGATGTTCAGTGCAATGATGGCAATCAGAGATTCAAAGACCGACTGAAGCTGGATAatcagactggatctctgaccatcatgaACACCAGCACTGCAGACTCTGGAGATTATTATCTAGAAATCAACAACAACACATTCAGCATCATGAGGAGATTCAGTGTTAATGTCACTGATTCAGCTCATCCAGAAGAAGGGCCTGCTGTTACTGTCTATGTGCTGATAGCTGTTACTGTCTATGTGCTGATAGCTGTTGCTGTTGTTGGTGCTGCAGCAATCTTATATTGGAAGTGTTGTAAATCATCAAAACAAAATGGAAACGGGACAGAAGAACAAGATACTAAGatgaattCTGTAAAATCTGAGCTCCTTTACTCTGGACAGAATGCTGCTGCTAATGAAGTGTCCGGAAATCCTTCCACTCAATTATTGCCTGCTGACAAGAATGGATTGGCTAATGGCGCAttgtaacattatttttattattatttgaagggTCCTGCTGAAAAGTTTACATGAAGGGAAGTGCCACAATATTAGAATGTCAGCAAGGGGACAAGCGGCAGCTGCAACAAGCTAGTCAAAACCAAGTTTTTACAAAGCCATTTAAATTCAAGAAAAACCAAAAAGTGCCTGATGTTTTTATGCAAGAGGGAAGGGATTACAGTTTCTAATGGGATTCAGACAGAAATGGGGTTTAGGTTTAAACGCAGTCAGATAAATATGAAATtctattttctaagtgtaaattCACACACTGTGATCAAACATTTCCACAGTTAATAACCTTGTAATTTTGGCAAAGTATTTTTTCATAGTCATATTGGTTTAGAATTATCCTTGCATTATATTTCCAACTGGTTAAGTTACTGGTTCGTGTCGGTGCTTCTAGAACAACAGCTGGTGGCAAATGTGTTATCTTTCtaatgaaataatattaataactaatttcctcTTTTTGGGAACCACACCttgcagcgccatgtattttataatttagaaaccggccactttattaggtacacctgcagatttgtcagctgcacatttcTATATGTGAAtctcttgttccaccacatcccaaaggtgctctattggattgggatctggtgactgtggaggccatttgactacagtgaactcattgccatgttcaagaaaccagtctgagatgattcatgttttatgacatggcattatcctgctggaagtagccatctgaagatgggtacactggtcataaagggatggacatggtcagcaacaatactcagataggctttggtgttgacacaatgctcaattggttctaatgggcccaaagtgtgccaagaaaatatcttccACACTATTAcactaccaccagcctgaatccttgctacaagacaggatggattcatgctttcatgttgttgatgccaaattctgacccgaccatctgaatgtcgcagcagaaatcgagactcatcagacgagGCATTTCTGCATTCCTCagttgtagcgagtggttatttgagttagtTACCTTtctatcatggcaaagataaaataaatcagttattagaaatgagttattaaaactattatgtttagaaatgtgttaagaatatcttctctccattaaacagaagatgaggaaaaaataaacaagagggctaataattctgacttcaactgtatttacatttttactgccTTTAAGGGTTTATGTATTTGAGAGGAGATGTGCCTTTAAACAATGAATTTCTTGCAGTAGTGCCTTAACATCCAATTTACTCATTGAACTAGCTATAGCTCAACTCCAATAGGTACTTTTAAAttgataaattatacatttaataatttaaaagaaaaaaaatatgaattatctCCATAATTTCCATGTCATAGTATAACACTATGCATTTCTAGTGCTTGGATGGTAATAAATGCACTGAAAGACACTAATGTTTAAGCATTCACTTTTTCTGATCAAATAGAAACACAGTTTTTGTCATGTGCAGTTTAAAAAGGGAGTattgttactttttattatttttgctgctgtattttttgctttgctgctgaattatttaaaactaatgagacaaatatatatatatatactgatctTGTGTACGAATGtacctttttttcctttttttactaCAATTGTTCAATTTATCACATTGCTTGTAGTTTATGGTGTCACAGAAGTATTATTTTCTTAAAGTGTTTTGTACTGTAGTATACTGATTAAGCTGAGCAGAAGTGTTTATATCTCAGTTTATATCTCATGGACcttgaaaaaaacagcttatgcAGTGATGACATCTCTTTTCTGAGTGTATTCCCTCATATatgagtttttagatattttttgttCAAACACCGAATTATTAAACACTTAAAACATATGCACATGTTATTTTGTTTGCTGTAAAACCCATATTTTTGTGACCATTAGTGCaagttgcaatttttttttttattgtttttgatgaCCAAGTTATTGCACAAGAGTATACCATGTGTTTGCCATTGTTGGCATGGTTGTACTGAAGGACTTGGGAATCTTGACGTCTAAATGTATGGAAAGGTCATTTTATGCTAAAGGAATGTGATAAGTTAGTTTCATGCCTGACAAAAAAAAAGCTATTGCCTTAAGTTCTTCTGTTCTTCAAACTGActttattgtttgtgtttataCATGCATATtggctttgttgttgtttttccattGAATAATACAACAATATTTGGGCCTTCAGTTGTAATGCAtagaaaaagtttttaaataaatttgtttcgACTGGAATCTA

Function

symbol description
si:ch211-209l18.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-221 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000090847

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041042 True 3747 mRNA 0.37 6 6632702 6651382

Neighbor

gene id symbol gene type direction distance location
XLOC_020831 CR352226.2 coding downstream 31115 6587550 ~ 6601587 (-)
XLOC_020830 NA coding downstream 66741 6563646 ~ 6565961 (-)
XLOC_020829 zgc:171490 coding downstream 70084 6546697 ~ 6562618 (-)
XLOC_020828 CR352226.5 coding downstream 103325 6527414 ~ 6529377 (-)
XLOC_020827 CR352226.4 coding downstream 112676 6515397 ~ 6520026 (-)
XLOC_020833 CR352226.3 coding upstream 10330 6661712 ~ 6662906 (-)
XLOC_020834 NA coding upstream 45135 6696517 ~ 6711516 (-)
XLOC_020835 NA coding upstream 76158 6727540 ~ 6753026 (-)
XLOC_020836 CT583625.5 coding upstream 113598 6764980 ~ 6777976 (-)
XLOC_020837 si:ch1073-188e1.1 coding upstream 137379 6788761 ~ 6801876 (-)
XLOC_020825 CR926879.1 non-coding downstream 156444 6476142 ~ 6476258 (-)
XLOC_020838 FO904898.6 non-coding upstream 157984 6809366 ~ 6818528 (-)
XLOC_020851 NA non-coding upstream 771502 7422884 ~ 7423468 (-)

Expression


Co-expression Network