G108042


Basic Information

Item Value
gene id G108042
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4849747 ~ 4849961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122786
GTTAACACATAATGAATGGTAAAGAAAGCCGTACTCATACAGTTAACACATAATGAATGTACTCATACAGTTAACACGTAATGAATGGTAAAGAATGCCGTACTCATACAGTTAACACATAATGAATGGTAAAGAAAGCCGTACTCATACAGTTAACACATAATGAATGTACTCATACAGTTAACACATAATGAATTTACTCATACAGTTAACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122786 True 215 lncRNA 0.32 1 4849747 4849961

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 112463 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 195014 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 213609 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 277366 4327983 ~ 4572381 (+)
deptor deptor coding upstream 547211 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 298140 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 345970 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 378096 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 424195 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 433733 5283628 ~ 5285741 (+)
G108031 NA non-coding upstream 7398 4842072 ~ 4842349 (+)
G107967 NA non-coding upstream 9647 4839404 ~ 4840100 (+)
G107965 NA non-coding upstream 11809 4837383 ~ 4837938 (+)
G107958 NA non-coding upstream 29451 4819733 ~ 4820296 (+)
G107942 NA non-coding upstream 64203 4784631 ~ 4785544 (+)
G108070 NA non-coding downstream 37907 4887868 ~ 4888093 (+)
G108071 NA non-coding downstream 38135 4888096 ~ 4888300 (+)
G108084 NA non-coding downstream 63093 4913054 ~ 4913353 (+)
G108136 NA non-coding downstream 101798 4951759 ~ 4952386 (+)
G108139 NA non-coding downstream 105487 4955448 ~ 4955782 (+)
G107955 LOC106592862 other upstream 38172 4808739 ~ 4811575 (+)
G107922 NA other upstream 104161 4744168 ~ 4745586 (+)
G106814 NA other upstream 711251 4137813 ~ 4138496 (+)
G106775 NA other upstream 822153 4027075 ~ 4027594 (+)
G106595 NA other upstream 1171897 3676265 ~ 3677850 (+)
G108048 NA other downstream 7950 4857911 ~ 4858274 (+)
G108280 NA other downstream 286395 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 446218 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 656585 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 731332 5575366 ~ 5592253 (+)

Expression


Co-expression Network