G108084


Basic Information

Item Value
gene id G108084
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4913054 ~ 4913353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122832
GGCCTCCAGGTAACTACCACACACAGAGGTGCTGGCCTCCAGGTGACTACCACACACAGAGGTGCTGGCCTCCAGGTGACTACCACACACAGAGGTGCTGGCCTCCAGGTAACTACCACACACAGAGGTGCTGGCCTCCAGGTGACTACCACACACAGAGGTGCAGCACTGGAGACACAGCAGACTCCTGTTTGGTTTTCCCACGGGGGGCCtctgaggaggaagggagagaaacagTCAATTCAGGAAAGTTGACCTCCCTCAGGGAAATTGGTTTGGCCATATTAACGTGTTTAAGGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570806 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122832 True 300 lncRNA 0.55 1 4913054 4913353

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 175770 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 258321 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 276916 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 340673 4327983 ~ 4572381 (+)
deptor deptor coding upstream 610518 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 234748 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 282578 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 314704 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 360803 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 370341 5283628 ~ 5285741 (+)
G108071 NA non-coding upstream 24754 4888096 ~ 4888300 (+)
G108070 NA non-coding upstream 24961 4887868 ~ 4888093 (+)
G108042 NA non-coding upstream 63093 4849747 ~ 4849961 (+)
G108031 NA non-coding upstream 70705 4842072 ~ 4842349 (+)
G107967 NA non-coding upstream 72954 4839404 ~ 4840100 (+)
G108136 NA non-coding downstream 38406 4951759 ~ 4952386 (+)
G108139 NA non-coding downstream 42095 4955448 ~ 4955782 (+)
G108149 NA non-coding downstream 50517 4963870 ~ 4964105 (+)
G108170 NA non-coding downstream 71414 4984767 ~ 4984975 (+)
G108189 NA non-coding downstream 90503 5003856 ~ 5004116 (+)
G108048 NA other upstream 54780 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 101479 4808739 ~ 4811575 (+)
G107922 NA other upstream 167468 4744168 ~ 4745586 (+)
G106814 NA other upstream 774558 4137813 ~ 4138496 (+)
G106775 NA other upstream 885460 4027075 ~ 4027594 (+)
G108280 NA other downstream 223003 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 382826 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 593193 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 667940 5575366 ~ 5592253 (+)
G108682 NA other downstream 806612 5719965 ~ 5725579 (+)

Expression


Co-expression Network