G108189


Basic Information

Item Value
gene id G108189
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5003856 ~ 5004116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122949
gttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctgaggcatggtcctagggctcaggtcctccgagagagagaaagaaagagagaaagagagaattagagagagcacacttaaattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggcggctgagacagga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122949 True 261 lncRNA 0.51 1 5003856 5004116

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 266572 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 349123 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 367718 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 431475 4327983 ~ 4572381 (+)
deptor deptor coding upstream 701320 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 143985 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 191815 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 223941 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 270040 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 279578 5283628 ~ 5285741 (+)
G108170 NA non-coding upstream 18881 4984767 ~ 4984975 (+)
G108149 NA non-coding upstream 39751 4963870 ~ 4964105 (+)
G108139 NA non-coding upstream 48074 4955448 ~ 4955782 (+)
G108136 NA non-coding upstream 51470 4951759 ~ 4952386 (+)
G108084 NA non-coding upstream 90503 4913054 ~ 4913353 (+)
G108190 NA non-coding downstream 461 5004577 ~ 5004821 (+)
G108192 NA non-coding downstream 1154 5005270 ~ 5005557 (+)
G108193 NA non-coding downstream 3090 5007206 ~ 5007598 (+)
G108198 NA non-coding downstream 6817 5010933 ~ 5011660 (+)
G108214 NA non-coding downstream 20592 5024708 ~ 5024950 (+)
G108048 NA other upstream 145582 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 192281 4808739 ~ 4811575 (+)
G107922 NA other upstream 258270 4744168 ~ 4745586 (+)
G106814 NA other upstream 865360 4137813 ~ 4138496 (+)
G106775 NA other upstream 976262 4027075 ~ 4027594 (+)
G108280 NA other downstream 132240 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 292063 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 502430 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 577177 5575366 ~ 5592253 (+)
G108682 NA other downstream 715849 5719965 ~ 5725579 (+)

Expression


Co-expression Network