G108192


Basic Information

Item Value
gene id G108192
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5005270 ~ 5005557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122952
ctataaccagtcactaccattactattggagacactaccactactataaccagtcactaccattactactgtagacactaccactactataaccagtcactaccattactactggagacactaccactactataaccagtcactaccattactactggagacactaccactacaataaccagtcactaccattactactgtagacactaccactactataaccagtcactaccactactataaccagtcactaccattactactgtagacactaccactactataact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122952 True 288 lncRNA 0.40 1 5005270 5005557

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 267986 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 350537 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 369132 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 432889 4327983 ~ 4572381 (+)
deptor deptor coding upstream 702734 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 142544 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 190374 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 222500 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 268599 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 278137 5283628 ~ 5285741 (+)
G108190 NA non-coding upstream 449 5004577 ~ 5004821 (+)
G108189 NA non-coding upstream 1154 5003856 ~ 5004116 (+)
G108170 NA non-coding upstream 20295 4984767 ~ 4984975 (+)
G108149 NA non-coding upstream 41165 4963870 ~ 4964105 (+)
G108139 NA non-coding upstream 49488 4955448 ~ 4955782 (+)
G108193 NA non-coding downstream 1649 5007206 ~ 5007598 (+)
G108198 NA non-coding downstream 5376 5010933 ~ 5011660 (+)
G108214 NA non-coding downstream 19151 5024708 ~ 5024950 (+)
G108217 NA non-coding downstream 21623 5027180 ~ 5027412 (+)
G108221 NA non-coding downstream 30467 5036024 ~ 5036266 (+)
G108048 NA other upstream 146996 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 193695 4808739 ~ 4811575 (+)
G107922 NA other upstream 259684 4744168 ~ 4745586 (+)
G106814 NA other upstream 866774 4137813 ~ 4138496 (+)
G106775 NA other upstream 977676 4027075 ~ 4027594 (+)
G108280 NA other downstream 130799 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 290622 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 500989 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 575736 5575366 ~ 5592253 (+)
G108682 NA other downstream 714408 5719965 ~ 5725579 (+)

Expression


Co-expression Network