G108262


Basic Information

Item Value
gene id G108262
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5097542 ~ 5098886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123025
TGCCAAAATATGTCTGTATCATAAGATATGTTGCTAGGTGAAGACAATAGATATTCTTGGAGGACGCATGTTCTCTCTGTCAAATAGCATGTTGGATAGCAACCAAGTTTCAACCATCTGAACAGTCTGATTTATAACCAGTGCATAAATACGTTGCTTTGGATAATGTTTCATATGGTATATGAATGGAAAAACATTTTCTTTGAGAACATCATGTTTTTTTAAAGCATTAAACATTGCTTGCATTGGCCACAGTCCTGATCTTATACTAACAATGGACTTTCACTGTATAAATCATGGACCAAATGGACTTTCACTGTTTAAATCATGGACCAAATGGACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGGACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTATAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCACAGACCAAATACCAGTAATCCTACTTACACAAAGATCAGCTCAAGTGTTGTCCCAgagagagagagagaaacagacaggtaggatacaacacaatgctgAAGGGTTTTCCCAGGCCACTCATCATGTGTTTTATTCAACAGAcgatggatggagagagtggagagagagagagaaacagacaggtaggatacaacacaatgctgAAGGGTTTTCCCAGGCCACTCATCATGTGTTTTATTCAACAGAcgatggatggagagagtggagagagagagagaaacagacaggtaggatacaacacaatgctgAAGGGTTTTCCCAGGCCACTCATCTATCA
>TU123026
TGCCAAAATATGTCTGTATCATAAGATATGTTGCTAGGTGAAGACAATAGATATTCTTGGAGGACGCATGTTCTCTCTGTCAAATAGCATGTTGGATAGCAACCAAGTTTCAACCATCTGAACAGTCTGATTTATAACCAGTGCATAAATACGTTGCTTTGGATAATGTTTCATATGGTATATGAATGGAAAAACATTTTCTTTGAGAACATCATGTTTTTTTAAAGCATTAAACATTGCTTGCATTGGCCACAGTCCTGATCTTATACTAACAATGGACTTTCACTGTATAAATCATGGACCAAATGGACTTTCACTGTTTAAATCATGGACCAAATGGACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGGACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTATAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCATGGACCAAATGTACCTTCACTGTTTAAATCACAGACCAAATACCAGTAATCCTACTTACACAAAGATCAGCTCAAGTGTTGTCCCAgagagagagagagaaacagacaggtagAATACAACACAATGCTGAAGGGTTTTCCCAGGCCACTCATCATGTGTTTTATTCAACAGAcgatggatggagagagtggagagagtggagagagagagagaaacagacaggtaggata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123025 False 914 lncRNA 0.39 4 5097542 5098886
TU123026 True 776 lncRNA 0.40 3 5097542 5098520

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 360258 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 442809 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 461404 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 525161 4327983 ~ 4572381 (+)
deptor deptor coding upstream 795006 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 49215 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 97045 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 129171 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 175270 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 184808 5283628 ~ 5285741 (+)
G108261 NA non-coding upstream 447 5096781 ~ 5097095 (+)
G108241 NA non-coding upstream 15908 5079374 ~ 5081634 (+)
G108233 NA non-coding upstream 43525 5053050 ~ 5054017 (+)
G108221 NA non-coding upstream 61276 5036024 ~ 5036266 (+)
G108217 NA non-coding upstream 70130 5027180 ~ 5027412 (+)
G108281 NA non-coding downstream 38778 5137664 ~ 5138358 (+)
G108300 NA non-coding downstream 68509 5167395 ~ 5171655 (+)
G108252 NA non-coding downstream 92691 5191577 ~ 5192957 (+)
G108323 NA non-coding downstream 107679 5206565 ~ 5207066 (+)
G108326 NA non-coding downstream 110894 5209780 ~ 5210360 (+)
G108048 NA other upstream 239268 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 285967 4808739 ~ 4811575 (+)
G107922 NA other upstream 351956 4744168 ~ 4745586 (+)
G106814 NA other upstream 959046 4137813 ~ 4138496 (+)
G106775 NA other upstream 1069948 4027075 ~ 4027594 (+)
G108280 NA other downstream 37470 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 197293 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 407660 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 482407 5575366 ~ 5592253 (+)
G108682 NA other downstream 621079 5719965 ~ 5725579 (+)

Expression


Co-expression Network