G108300


Basic Information

Item Value
gene id G108300
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5167395 ~ 5171655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123074
ttacatatgtaatctgctactagggagacggttacatatgtcatctgctactagggagactgttacatatgtcatctgctactagggagactgttacatatgtcatctgctactagggagactgttacatatgtcatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtcatctgctactagggagactgttacatatgtcatctgctactagggagactgttacatatgtcatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagacaGTTACatatgtaatctgctactagggagacaGTTACatatgtcatctgctactagggagacagttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctAACAGAGAGATGACatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactaggg
>TU123073
tgttacatatgtcatctgctactagggagactgttacatatgtcatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagacaGTTACatatgtcatctgctactagggagacagttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctAACAGAGAGATGACatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactagggagactgttacatatgtaatctgctactaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123074 False 763 lncRNA 0.40 3 5167395 5171655
TU123073 True 517 lncRNA 0.43 2 5170196 5171655

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 430111 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 512662 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 531257 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 595014 4327983 ~ 4572381 (+)
deptor deptor coding upstream 864859 4236880 ~ 4302536 (+)
tbc1d31 tbc1d31 coding downstream 24276 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 56402 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 102501 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 112039 5283628 ~ 5285741 (+)
ccdc127a cc127 coding downstream 134621 5306276 ~ 5310035 (+)
G108281 NA non-coding upstream 29037 5137664 ~ 5138358 (+)
G108262 NA non-coding upstream 68509 5097542 ~ 5098886 (+)
G108261 NA non-coding upstream 70300 5096781 ~ 5097095 (+)
G108241 NA non-coding upstream 85761 5079374 ~ 5081634 (+)
G108233 NA non-coding upstream 113378 5053050 ~ 5054017 (+)
G108252 NA non-coding downstream 19922 5191577 ~ 5192957 (+)
G108323 NA non-coding downstream 34910 5206565 ~ 5207066 (+)
G108326 NA non-coding downstream 38125 5209780 ~ 5210360 (+)
G108330 NA non-coding downstream 50213 5221868 ~ 5222697 (+)
G108331 NA non-coding downstream 51952 5223607 ~ 5224256 (+)
G108280 NA other upstream 30403 5136356 ~ 5136992 (+)
G108048 NA other upstream 309121 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 355820 4808739 ~ 4811575 (+)
G107922 NA other upstream 421809 4744168 ~ 4745586 (+)
G106814 NA other upstream 1028899 4137813 ~ 4138496 (+)
G108354 LOC106573122 other downstream 124524 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 334891 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 409638 5575366 ~ 5592253 (+)
G108682 NA other downstream 548310 5719965 ~ 5725579 (+)
G108702 NA other downstream 608559 5780214 ~ 5782921 (+)

Expression


Co-expression Network