G108334


Basic Information

Item Value
gene id G108334
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5238227 ~ 5240350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123127
ACACGCCTTTTCGTCCAAATGTATTGTATTTTGTCCACAAAAcaagtaataaaatatatatttgtctaAATCAAGCCACAgcctaaaaaaaaaatcagtttgaTTTCAATTAAAAAGCATTGCAAAGTCTATGGCTCAGGGGACTAAAGCTTTTTCCACGGAGTTTTCAGCTCCATGGCTACTCTGTCTCAACATGAAAAATTCCTTGGTTTACCATAACGTTTGCAAATAAACTCTCTCACTTTTCCCAAAGCACCTCAACATATCCAGAAACCAAACATTGAGCCAAACATTCTTCTCATAGATAACTtaataaatacagtaggagaaAGGAGACTGGCTGACATGATCCATTATAGCTGTAGCTAGCAGAATAGTATGTTAAAAGACAGGTTCAAATATTGTGTGCGCACAATCTAATAGGAAAACTGTTAAAGCATGTATTAAAGTTATGTATTCAACGGTTGGTTATTAGTACTAAACAAGCACCTTTCTAAATATTGAGAAATAGcaaagaggacagacaggtaagAATTATTGTACTAGGATAAAAACAGTCATGTACTATGGTCACAATGTCACGTCTACTGTACAAAAAAAAGAGCAATGTGGATACATTGAGTTGCCAACTGAAGAAGGCAAAGAGccttcaaaaaatatatttttttacacattaACAGTAAAACACCATACAAGCTATTAGTTGAAGTTGAGAGACAGGATTAATCATAAATAAAGATTATAAAACCATTAAAAACAACTTTTCTAAGACAAGCACATAATGCTGTTTCATCTGCAGTCAGGTGATTATTTCATGCACTATATGGATCTCAACATTCAAATGCATCTTTTACCTTAACTATGGTACAAATAACTGTTCCTGCATGAAAACGTTAACGATTTCACAGCATAACATGCTGCCCAATTTGAAATGTTTATGATGAGCATGAGGTATCCAcgatcttctcctcctccacctcttctgtTGTCAAGTCTTGATGAAACCCTGCTCAGAAAGAATGAGCCATGCAGGCACATAGGTTTTGTCTCCTCAAAAAGGTTCCGAAGGTTCCATCCGTTTTTCTGTAAAATGTTGTGATGTTTCAACTAGATTCTAGATTGAGATTCTAGAACCAAAGTGACTAGAACTTGGTAAAGCATGTTTAGAATAGTTTGAGAGAACGTTGGTAACTCATCAGGTCCGAGCCAGGCTGGAACCCAGTGACCAGAGCATATAGGACATGGCTTACAGGTAAGCAACAATGTCTTGGTTCTACTAATGTGCACATGTCAAAACTTGTCATTTAAAATGACAGTTGAGGAGAGCATAGTCTGCAAACGTTGTAAAAATAAAAGCAAAACAAACGTGCATCTGATCATACATTAGAAAAACACTTTGAAAACAGCCCTGTATCAAGTCCTCCAACTCTAGTCTTCATACATACAAGTACTGCAGTCTTAAAAACAATAAAAGTTCTACGTAATTCAAACTCACGTTACACGTTTCCAAGTCAGCAGAGTTTCACATGATTGAAATAGGGACCCACATTGTGCCAGTTGGTTGGTGCAGGAAGCAGTAGGCCACATACAGACCATTGACCATTTTCATTTGTGTCATATCAACACCCAACTTTAGAATTGATCCACAAGGAGAGGGGTAAAGTCAATAAGGTGCATCCTCTTGAAAATATAATCATTTCAGAGGAGGACAATACAAGGCAGAATACTTAGTTCTACAGTGTTCAAAAAGAGCTCATATAGAAAGAGATTTGGTCTCTTAAAGCCATTACAAGGTCAAAGGGATATAAGGTGCCTAATCAAAGTTGTTTCCCCCCACAAGAACATGTTAAAGAGATTCTCCGGAACtttttgtatacattttagccagtagttctgaaagtagagTTCAGCTAAATTGTGAACTACCTCACATCACTGGCATAGAACACAGAGACCTTGCGAGGGGGGCTCTGAACACTGACACGTCCAGTCCAAAGCaagaggtttaaaaaaatacttggTAGTCGCAAAAgttccggagcatgtctttaatacAGTAGTGGGCAAAGTGCACAATAATAAGTGCTACACTGTCAGTTTCCTGCAGACAccacagtatacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123127 True 2124 lncRNA 0.54 1 5238227 5240350

Neighbor

gene id symbol gene type direction distance location
LOC110520809 LOC106598492 coding upstream 2333 5228057 ~ 5235894 (+)
tbc1d31 tbc1d31 coding upstream 11186 5195931 ~ 5227041 (+)
LOC110506140 LOC106606110 coding upstream 61240 5148101 ~ 5176987 (+)
LOC118937361 NA coding upstream 500943 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 583494 4602958 ~ 4654733 (+)
mrpl32 LOC106595598 coding downstream 33806 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 43344 5283628 ~ 5285741 (+)
ccdc127a cc127 coding downstream 65926 5306276 ~ 5310035 (+)
phf20l1 LOC100196869 coding downstream 81204 5321554 ~ 5349672 (+)
tg LOC106573164 coding downstream 107902 5348252 ~ 5447200 (+)
G108332 NA non-coding upstream 12097 5225206 ~ 5226130 (+)
G108331 NA non-coding upstream 13971 5223607 ~ 5224256 (+)
G108330 NA non-coding upstream 15530 5221868 ~ 5222697 (+)
G108326 NA non-coding upstream 27867 5209780 ~ 5210360 (+)
G108323 NA non-coding upstream 31161 5206565 ~ 5207066 (+)
G108336 NA non-coding downstream 261 5240611 ~ 5241683 (+)
G108333 LOC100380869 non-coding downstream 9363 5249713 ~ 5254032 (+)
G108361 NA non-coding downstream 93403 5333753 ~ 5334485 (+)
G108529 NA non-coding downstream 125481 5365831 ~ 5366530 (+)
G108280 NA other upstream 101235 5136356 ~ 5136992 (+)
G108048 NA other upstream 379953 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 426652 4808739 ~ 4811575 (+)
G107922 NA other upstream 492641 4744168 ~ 4745586 (+)
G106814 NA other upstream 1099731 4137813 ~ 4138496 (+)
G108354 LOC106573122 other downstream 55829 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 266196 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 340943 5575366 ~ 5592253 (+)
G108682 NA other downstream 479615 5719965 ~ 5725579 (+)
G108702 NA other downstream 539864 5780214 ~ 5782921 (+)

Expression


Co-expression Network