G108333 (LOC100380869)


Basic Information

Item Value
gene id G108333
gene name LOC100380869
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5249713 ~ 5254032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123125
GTCTCCCCCTTCTGGTAAGAAGTGGTTTTCCTGGGCTCCAACCACCACTACAGGGTTCTGGGTGCCCTCACTGCTCTGGCCTCCAGCCCTAGCCTCCACAGCTTCCTCCACCCTGGGCTGGGTAGCCTCCGTTGTAGCCTGGCTAGCCTCCTCCGTGGTCCGGCTGTCCTTAGTGTCTTTCTCCATGGGCTGTCTGTCCTGGTTCTCCTGTTGGGCTGGTTCCTCCTGCTCCATGGGGGTCTCCTCAGCCCCAGTGATCTCCAGCTCCTCCAGGCCTGACTCTGCTGCTGCAGCatcaccaccctcctcctcctcctcgctctctgcccctctcctctcctcctcttcctctccagacTCCACCACAGCAGAGTGGTCTTTAGACGTGTGAGGAGAGGACCTTTTCCTGATGATGCCGTTGCACCAGCGGCTCTTCCTGCGCTTCTTCTTCTGAGCTGAAGGGCGTGGCGTGGTCACAGCTGAGGGAGCAGCAGCGGTAGACTCTTTAGAGGGGCCTGCTGCGTCGGTGCTCTTGGCATCCACTGCTCTGGTCTTGGGATGAACGTGATAGTAGGATGGAGCGAACCTTGAAGTGGAGCAACCTCTTGTGCTGCGGGACTCCTTGATATCCTCGCAGATCTTCTCAAAGTCTTCATCCAGTTCGTCTTTGACGATGGCCTGAACAGTGTCCTTCAGACCACAGGCTCTGTGGCGGATCTGACGATCGGAAGGATCTTTGTCAGGGTTGTATTCCAGACAGTTCTTCCAGATGAGATCCACGTCGTGGACAAACTCCTTCACAGTCACGTACTTGTGAGTGTCGATGttggagaggacagtggacagGTCCATGGGCTGCTCTATAACTGTAGCATAGTCAGGTACCTCCTCCAGGTCGACAGGCTTTGTGAAGGCCTTGAAGCGTTTGTCCTGAGAGAGGCGGTTGGTGACATCACGCAGGAAGAGGCGGAGCTCCCTGAGAGtgtcttcctcctgctcctccaatCGCTGCTGCTCCTTTTCTGTCAGCATCCttgggggaagagggggagcaACAGGAAGCACCTCCAGGGCTGCAAGCACTGCTTTCTTCTGGGATGCAGGAGCTTTTGCAGCCTGGTTTAGGATGAGATCGTCAAAGAAGTTCCTTCTCTCCTGTGGGGTTGGGACCTGAACCTGGAGCACCTCTCCATACTCAGCACAGAACAGATCCTGGACCTATGGGGGGGGGTGATGATTCACCAAGTGAACATAACATTCAGCTGAATGGGAATGAACGAGATCATTCTGACTGATCCCCTGCCCAGAAGCCCAATTCCAACCCTCCAGCTTCTCCCACAGGGGGAGGGAATGAGTGCACATTTTCTAGGGCTTGTGTCCCTTTGGTGATTAgatttttattaggatctcttttagtcctcgtttggactaatcttccaagaaaGAGTCCTTAAAAAACATCAAAATCCTACACTCACATAACACACAGCAGACAAAATACACTGCCATGTTGGTGATGTTAGGGGCGGTGTGTTCACTACATCCTGTTAGACTGCTGTGGGGCGGTGTGTTCACTACATCCTGTTAGACTGCTGTGGGGCGGTGTGTTCACTACATCCTGTTAGACTGCTGTGGGGCGGTGTGTTCACTACATCCTGTTAGACTGCTGTGGGGCGGTGTGTTCACTACATCCTGTTAGACTGCTGTGGGGCGGTGTGTTCACTACATCCTGTTACACTGCTGTGGGGCGGTGTGTTCACTACATCCCGTTACACTGCTGTGGGGTGGTGTGGTCACTACATCCTGTTAGACTGCTGTGGGGCGGTGTGTTCACTACATCCCGTTAGACTGCTGTGGGGCGGTGTGTGTCTACAGTACCTACCTCAGGGAAGAGGCTGCTGTGGGGGACATTACAGGTGGCCAGCAGCAGGATGGGTGAGAATGAGGGGATGTCCTGTAACAAGCTGAGGAAGGTAGCTCTGAGAGCAGACCCCACCGTGTCCCACCACCTCTGGATGTGAGGGATATAAAGGATACTGGGGGACGTCCTCTTGGCCTCACAGAACATCTACAACACAACGAAACACATCATTACAGATCAGTGTTTATATGGACCTGCATGCCTCCTCACAGAAGAGCTAAGAGTCCAAACATACAAGACATCAATACTGCCCATCTCTGGgttcatcaatactgtccatctCTGGgttcatcaatactgtccatctCTGGGTTCATCAATAC

Function

NR:

description
ATPase family AAA domain-containing protein 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123125 True 2244 lncRNA 0.54 8 5249713 5254032

Neighbor

gene id symbol gene type direction distance location
LOC110520809 LOC106598492 coding upstream 13819 5228057 ~ 5235894 (+)
tbc1d31 tbc1d31 coding upstream 22672 5195931 ~ 5227041 (+)
LOC110506140 LOC106606110 coding upstream 72726 5148101 ~ 5176987 (+)
LOC118937361 NA coding upstream 512429 4735246 ~ 4737284 (+)
LOC118937359 NA coding upstream 613575 4634503 ~ 4636138 (+)
mrpl32 LOC106595598 coding downstream 20124 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 29662 5283628 ~ 5285741 (+)
ccdc127a cc127 coding downstream 52244 5306276 ~ 5310035 (+)
phf20l1 LOC100196869 coding downstream 67522 5321554 ~ 5349672 (+)
tg LOC106573164 coding downstream 94220 5348252 ~ 5447200 (+)
G108336 NA non-coding upstream 8030 5240611 ~ 5241683 (+)
G108334 NA non-coding upstream 9363 5238227 ~ 5240350 (+)
G108332 NA non-coding upstream 23583 5225206 ~ 5226130 (+)
G108331 NA non-coding upstream 25457 5223607 ~ 5224256 (+)
G108330 NA non-coding upstream 27016 5221868 ~ 5222697 (+)
G108361 NA non-coding downstream 79721 5333753 ~ 5334485 (+)
G108529 NA non-coding downstream 111799 5365831 ~ 5366530 (+)
G108547 NA non-coding downstream 126046 5380078 ~ 5380438 (+)
G108280 NA other upstream 112721 5136356 ~ 5136992 (+)
G108048 NA other upstream 391439 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 438138 4808739 ~ 4811575 (+)
G107922 NA other upstream 504127 4744168 ~ 4745586 (+)
G106814 NA other upstream 1111217 4137813 ~ 4138496 (+)
G108354 LOC106573122 other downstream 42147 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 252514 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 327261 5575366 ~ 5592253 (+)
G108682 NA other downstream 465933 5719965 ~ 5725579 (+)
G108702 NA other downstream 526182 5780214 ~ 5782921 (+)

Expression


Co-expression Network