XLOC_020839 (FO904898.1)


Basic Information

Item Value
gene id XLOC_020839
gene name FO904898.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6829466 ~ 6854584 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041048
atcacgacgaTCACTACAATCAGCACAGATGCAGCGGCGCAGAGGAACGCGATGTTAAATACAGATGAGCCTGAACTGTcatttgctgctgctgctgtttcttGCAACTGGGTTTTTGGGAGCTGATTTATACGGAATTTCAGTGATAGAGGGAGATCCAGTCACTCTGCACACTAATGTTACAAAAACCAAACACGAGGAAGTTAAATATTACTTTGACGACACTCTTATCGCTCGACTCGCTAAAGATCTCAGTTTTGCTTGCACTGATGTGCAGTGTAATAAAGCTAATGAGAGTTTCAGAGGCCGACTGAAGCTGGACTATGAAACTGGATCCCTGACCATCATGAACACCACAAGCACAGACTCTGGAGGTTATCACCAACAGATCATCGGCAGTGGCACCAATTATGAAAAAACCATCAATGTTTCTGTCCATAATGGAGTGAAGAAGGGGTCTGCTACTTCCAATTCTATTGAAAATAATAACTTAAATGATTCCAGTTCGTCTTCAGCCAATGTAACAGGAATatgtgttgctgttgttttttttaatgctgctGTTGCCTTTGCTGCCTTTTAGTTTTATAAGTGTCAAACAGGAACTTAAAGTAAGTATTACAGAAAGCTAATTTAAGAAGATAAAAACGAGAAATTTGTAGTAtacaaaaaagaaatgtaaaaatgtaaatttgttgtAATTAACCAAAGTACTATATGCTTATTGTTCAAATAGACATCACAGGAAGGAGAACAGTGAACAGGTGAGCACTTAACCAC
>TCONS_00042325
GTGATTTCATATTTAATAACAAATGATATTTGGAACATCTGAATGAGCTTATGGATGCTCTTAGTGAACAAAATGAGCGACAACCACACTAAAAGATacaaagaatgaaaacaaaatattaaattgaaaGAAAACCAAAAAGTGCAAGTAAAACAGCATGAGTTCTGAcaaccacaaaatatacaatcaCCGGCTTTTGTTTTTGGGGACATTTTCATACACAGCATTCGTCTTGTCTGATTTCTGCAAGGAAAAACAAACTCAGTCAGAAATCTTGATAATGCAGCAGAATTGTTAGTTCAATGTAAGATTATCTCTCAaccaaaacaaaattatttaataactttatGAACGCATATGCAACATATTTTACTTCAGTATGACATTTTAAAATCTGaaatcattttttatatataatttttactcCAAAGGTTGTTTTTTAACACAAAGCTGCTTGTTGTTGCCTGAAAATGATGGTGATTATTTGTCTGCTCTAATTAGGTTCTATAAAAAAAGTTGCTTGTCTGCCACCTAGTGTACAGAAAACGCCACTACCTTTCAGATTTTGATTGGGGCAGCAAGTGAATGTAATGACACAGAATAACTCGATTTTTTATGTGCAAATTCCtaacattgatttattttttgaagaACCACTGCTGCTACAGAGCAGATGCTACAGGAAATGACATCAGTCATAGTTCGTCACAACCGTTACCTCATCAAACATTTTAGATGTAAAGCTCGTCACAGCAGCCTCAGAGCTGAGAATGGTTGACTTTGAcacaaaagcaacaaaaaaacttGTTAAAACGCGTCGACAAAACAACTAACGACTACTTAAAGGTGcacagcatgaattagcatgaacaCAGCAGCTTCAGCTCGAGGCCAGACTCCAGCACAGcacatcacgacgaTCACTACAATCAGCACAGATGCAGCGGCGCAGAGGAACGCGATGTTAAATACAGTTCTCAGGTTCGCCCATTCCAGTATCCCATTCGTCCGTGAAGACGTCAATCTCAATTACACCTTGTGACGTCATCAACTTCACAACCAATCAGCACAGGAGCTCAAAGTTTAAAAGGGATGCGAGCGGGGAAGCTTCTGCTTTTGCTCTGTCTTGCTTGCGGTCTTTGcttgcttttgtgtgtgtttttggcttGTTGTTATGTGCTGTGATGTTGACGTGAACTTAGTTTTGATTTTGGTCTTGTTCTTGTGTTGATCGCTGTTACCGTCTTGGATGTGTATATGTGGCAATCCCCTGACGTCTGTCTTCAGCTTCGCCCTTGGATTCGAGGAGCTTAGttgtcacgtgacatacatattgCATCACGCAGATAACTCTACTATCTAAACACACTAGTTTAGAAGTGAGCGTCACCCGCTGTAAGTTTTCTTCGTATATTTGGTTAGAAGAGTAGATTAATTATAGCGTGAAACCGCTGAAGAtcttttgtttggttgttttgtaTTAGACAGTTTAGAGGGTAATTAATAGTTAGAATTGgggtttttgttatatttctttcatttatttggtGCCACTTAACTCTCGTTTCCCCCACCATCTTTAATctatattgattgatttatgttgTGAGatcttgtaaataatattttattacttttcgACTTCCTTtcactattgtaaataaattcacttctttttgcagtattttggttGTCGTGTTGATATTTTGCCACCAACTGACCACAAAATATTATCACCTTAAATGTTACCTTTTAAACCCTAG
>TCONS_00042326
TGCTGCTACAGAGCAGATGCTACAGGAAATGACATCAGTCATAGTTCGTCACAACCGTTACCTCATCAAACATTTTAGATGTAAAGCTCGTCACAGCAGCCTCAGAGCTGAGAATGGTTGACTTTGAcacaaaagcaacaaaaaaacttGTTAAAACGCGTCGACAAAACAACTAACGACTACTTAAAGGTGcacagcatgaattagcatgaacaCAGCAGCTTCAGCTCGAGGCCAGACTCCAGCACAGTGCAAGTCTTTTAAGTGCTGTCTGCCTAAACTGTTGCCTACATATATTGATCTGAATTTGGGTCAGTAAAGTTAATCTACTGGATTGCCAGcacatcacgacgaTCACTACAATCAGCACAGATGCAGCGGCGCAGAGGAACGCGATGTTAAATACAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000090167

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041048 False 780 mRNA 0.39 5 6829466 6849585
TCONS_00042325 False 1763 lncRNA 0.37 3 6835759 6854584
TCONS_00042326 True 408 lncRNA 0.44 3 6849522 6853927

Neighbor

gene id symbol gene type direction distance location
XLOC_020838 FO904898.6 coding downstream 10938 6809366 ~ 6818528 (-)
XLOC_020837 si:ch1073-188e1.1 coding downstream 27590 6788761 ~ 6801876 (-)
XLOC_020836 CT583625.5 coding downstream 51490 6764980 ~ 6777976 (-)
XLOC_020835 NA coding downstream 76440 6727540 ~ 6753026 (-)
XLOC_020834 NA coding downstream 117950 6696517 ~ 6711516 (-)
XLOC_020840 FO904898.4 coding upstream 26861 6881445 ~ 6884981 (-)
XLOC_020841 CABZ01065328.1 coding upstream 67422 6922006 ~ 6923347 (-)
XLOC_020842 zgc:171500 coding upstream 77715 6932299 ~ 6941098 (-)
XLOC_020843 si:ch73-213k20.5 coding upstream 97523 6952107 ~ 6960943 (-)
XLOC_020844 fgfr1bl coding upstream 108340 6962924 ~ 6968756 (-)
XLOC_020833 CR352226.3 non-coding downstream 166560 6661712 ~ 6662906 (-)
XLOC_020831 CR352226.2 non-coding downstream 227879 6587550 ~ 6601587 (-)
XLOC_020851 NA non-coding upstream 568300 7422884 ~ 7423468 (-)
XLOC_020852 BX511034.4 non-coding upstream 584671 7439255 ~ 7442462 (-)
XLOC_020857 NA non-coding upstream 757420 7612004 ~ 7622403 (-)
XLOC_020858 BX511034.3 non-coding upstream 760088 7614672 ~ 7617991 (-)
XLOC_020860 NA non-coding upstream 794435 7649019 ~ 7651852 (-)

Expression


Co-expression Network