G108551



Basic Information


Item Value
gene id G108551
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5398337 ~ 5398594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU123404
gttcatggtcagtatgttgtagtgatgagatccctggtaggttcatggtcagtatgttgtagtgaGGTGCTGCAGGAGGAGATCcctggtaggttcatggtcagtatgttgtagtgaggtgctgcaggatgagatccctggtaggttcatggtcagtatgttgtagtgatgagatccctggtaggttcatggtcagtatgttgtagtgaGGTGCTGCAGGAGGAGATCActggtaggttcatggtcagtatgttgtag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU123404 True 258 lncRNA 0.48 1 5398337 5398594

Neighbor


gene id symbol gene type direction distance location
phf20l1 LOC100196869 coding upstream 48665 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 88302 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 112596 5283628 ~ 5285741 (+)
mrpl32 LOC106595598 coding upstream 122753 5274156 ~ 5275584 (+)
LOC110520809 LOC106598492 coding upstream 162443 5228057 ~ 5235894 (+)
ccn4b wisp1 coding downstream 52905 5451499 ~ 5457130 (+)
ptp4a3b LOC106596188 coding downstream 82381 5480975 ~ 5542867 (+)
dync1i1 LOC105016552 coding downstream 144400 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 176772 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 217402 5615996 ~ 5753847 (+)
G108549 NA non-coding upstream 6671 5391422 ~ 5391666 (+)
G108547 NA non-coding upstream 17899 5380078 ~ 5380438 (+)
G108529 NA non-coding upstream 31807 5365831 ~ 5366530 (+)
G108361 NA non-coding upstream 63852 5333753 ~ 5334485 (+)
G108554 NA non-coding downstream 2962 5401556 ~ 5401846 (+)
G108543 NA non-coding downstream 19804 5418398 ~ 5419781 (+)
G108567 NA non-coding downstream 60912 5459506 ~ 5460437 (+)
G108598 NA non-coding downstream 93397 5491991 ~ 5492744 (+)
G108608 NA non-coding downstream 109844 5508438 ~ 5509164 (+)
G108354 LOC106573122 other upstream 98404 5296179 ~ 5299933 (+)
G108280 NA other upstream 261345 5136356 ~ 5136992 (+)
G108048 NA other upstream 540063 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 586762 4808739 ~ 4811575 (+)
G107922 NA other upstream 652751 4744168 ~ 4745586 (+)
G108682 NA other downstream 321371 5719965 ~ 5725579 (+)
G108702 NA other downstream 381620 5780214 ~ 5782921 (+)
G108733 NA other downstream 501917 5900511 ~ 5900950 (+)

Expression



Co-expression Network