G108613


Basic Information

Item Value
gene id G108613
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5526704 ~ 5529066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123480
atgtacaccacctctagattcagttcagttcatcaggcagtatgtacaccacctccagattcagttcagttcatcaggcagtatgtacaccacctctagattcagttcagttcatcaggcagtatgtacaccacctccagattcagttcagttcatcaggcagtatgtacaccacctctagattcagttcagttcatcaggcagtatgaacacctcacctctagattcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggc

Function

NR:

description
protein tyrosine phosphatase type IVA 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123480 True 316 lncRNA 0.36 2 5526704 5529066

Neighbor

gene id symbol gene type direction distance location
ccn4b wisp1 coding upstream 69574 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 79504 5348252 ~ 5447200 (+)
phf20l1 LOC100196869 coding upstream 177032 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 216669 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 240963 5283628 ~ 5285741 (+)
dync1i1 LOC105016552 coding downstream 13928 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 46300 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 86930 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 283181 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 312451 5841517 ~ 5854355 (+)
G108608 NA non-coding upstream 17540 5508438 ~ 5509164 (+)
G108598 NA non-coding upstream 33960 5491991 ~ 5492744 (+)
G108567 NA non-coding upstream 66267 5459506 ~ 5460437 (+)
G108543 NA non-coding upstream 106923 5418398 ~ 5419781 (+)
G108554 NA non-coding upstream 124858 5401556 ~ 5401846 (+)
G108615 NA non-coding downstream 896 5529962 ~ 5532458 (+)
G108616 NA non-coding downstream 3921 5532987 ~ 5534119 (+)
G108583 NA non-coding downstream 44385 5573451 ~ 5575009 (+)
G108588 LOC106573343 non-coding downstream 71597 5600663 ~ 5602911 (+)
G108584 NA non-coding downstream 75917 5604983 ~ 5606316 (+)
G108354 LOC106573122 other upstream 226771 5296179 ~ 5299933 (+)
G108280 NA other upstream 389712 5136356 ~ 5136992 (+)
G108048 NA other upstream 668430 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 715129 4808739 ~ 4811575 (+)
G107922 NA other upstream 781118 4744168 ~ 4745586 (+)
G108682 NA other downstream 190899 5719965 ~ 5725579 (+)
G108702 NA other downstream 251148 5780214 ~ 5782921 (+)
G108733 NA other downstream 371445 5900511 ~ 5900950 (+)
LOC110505637 LOC106573538 other downstream 424820 5953886 ~ 5958813 (+)

Expression


Co-expression Network