G108616


Basic Information

Item Value
gene id G108616
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5532987 ~ 5534119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123483
ttcagttcatcaggcagtatgtacacctcacctctagattcagttcatcagacagtatgtacacctcacctctagattcagttcagttcatcaggcagtatgtacacctcacctccagattcagttcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggcagtatgtacacctcacctccagattcagttcagttcatcaggcagtatgtacaccacctctagattcagttcagttcatcaggc

Function

NR:

description
protein tyrosine phosphatase type IVA 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123483 True 261 lncRNA 0.45 2 5532987 5534119

Neighbor

gene id symbol gene type direction distance location
ccn4b wisp1 coding upstream 75857 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 85787 5348252 ~ 5447200 (+)
phf20l1 LOC100196869 coding upstream 183315 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 222952 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 247246 5283628 ~ 5285741 (+)
dync1i1 LOC105016552 coding downstream 8875 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 41247 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 81877 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 278128 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 307398 5841517 ~ 5854355 (+)
G108615 NA non-coding upstream 529 5529962 ~ 5532458 (+)
G108613 NA non-coding upstream 3921 5526704 ~ 5529066 (+)
G108608 NA non-coding upstream 23823 5508438 ~ 5509164 (+)
G108598 NA non-coding upstream 40243 5491991 ~ 5492744 (+)
G108567 NA non-coding upstream 72550 5459506 ~ 5460437 (+)
G108583 NA non-coding downstream 39332 5573451 ~ 5575009 (+)
G108588 LOC106573343 non-coding downstream 66544 5600663 ~ 5602911 (+)
G108584 NA non-coding downstream 70864 5604983 ~ 5606316 (+)
G108621 NA non-coding downstream 78297 5612416 ~ 5613037 (+)
G108622 NA non-coding downstream 79466 5613585 ~ 5614123 (+)
G108354 LOC106573122 other upstream 233054 5296179 ~ 5299933 (+)
G108280 NA other upstream 395995 5136356 ~ 5136992 (+)
G108048 NA other upstream 674713 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 721412 4808739 ~ 4811575 (+)
G107922 NA other upstream 787401 4744168 ~ 4745586 (+)
G108682 NA other downstream 185846 5719965 ~ 5725579 (+)
G108702 NA other downstream 246095 5780214 ~ 5782921 (+)
G108733 NA other downstream 366392 5900511 ~ 5900950 (+)
LOC110505637 LOC106573538 other downstream 419767 5953886 ~ 5958813 (+)

Expression


Co-expression Network