G108583


Basic Information

Item Value
gene id G108583
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5573451 ~ 5575009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123445
TAGAGAACCGTAGTTCGCTACCTAGTAATCCATGTTTACGTTTAATATTGTGAAGCTACTTGTCGGCCTTTCTCCAGTTTACTTCTGCCCGTGTTAGCGTGCTAGCTTTGTGCTTGATTGCACTCTGCAGAGGTTAGCAGCACTAGCGGTAGCAAGCAGTACAAGTTCGTTTCGTTCTTTTAAAAACCACATATATTAAAGTCAAGCTAGCTTCTCTATTTTCTCGGAAGCTTGTTCTAATGCCGATTGAATTTATCAAATGCTATAACTATATTTTTTGTTACCTAATGTTCCTAACTAGCTTGTTTTTATACTTATGATGTAGCAGGGTtctgaaaaaaatgtaataatgcaGATAAAGATTTGAAATTGAATGTTTTTCACACAACCCAGGTTCTGAGTTAGTTACACCATTATTCTGGCAGATCGTTGAAATCCAACGTCTATCCAACGCCATCTCTGCTGTTTCTAAAATGACACCGTATGAGGGAGACATAGTCAATGGAATAACAACACTGAATGTTGTAATATATGGATAGATAAACTTGTCAGTATTGTCTTATTTGACTTGTTCATGTTTTCTCACAGCCCTGTAGGGGGCGACCAAGGTCAAAGTTCAATTTCAATTTCCTTAGCTGCTATTGTCAGTGACAGACTGCATACAGTAGTATCATCTTTACAGATATGTTCAGTGTGTTGTCAAGATTGGTTGCCTGGTACTGTAAACATCCCCGACTGGAAGCTGTGATGTACATGTTCTAGCTTTCAGTAGGGTGTTTGCTGCTCCATTCTTCCACAGACTCCTAGACCAGTGTTGTTGTTTGTAGAtttagggctgcattccagtcaAAATTAGCaccttctcttcctcccatcACTTGGAGTAAACCCTCCAGTGATGTATGTATGGTGAAGTGGAAGAGGGAAGCAGTTGCAAGTAAAAGTGGATTTGGACCACGggaggctactgaggggaggatggctcataataatggccagaactgcatgaatggaatggcatacctttcatgtatttgataccattctgctccagccattaccacaagcctgtcctaccctattaagatgccaccaacctcaGGTTTGCATCTGCATTTAAATAACTGAATGTTATTGTTTGTACATCTGGTGTTTCCCAGACACAAGTGTGTCTGACTCAAGTGAGTGTGCTTTACTTCCAGTTCTACTGCTGAGGAAATGGAAGTATCCTAGCTTCTCCATTCTGAGTATAGTTACTGTAAACATCCTACACTCAGCTAAAGCCTGTATGGAAGGCTGGGGAGAGGGTGTTTACTTTGGCTGGCTTGGACAGCTTCAATCTGCATGGATGGGATTTAATGGATCACTCATGACGAGATGGAAAGCTTTATTTTTGTATGAACAGAGAAGGCTGCAATTGATTCCCATTGGTAGTTTTTTTTAATGAGAAACCTAACATGTAGAAAATGCAATCAATGGATGATATTTGGATGCATTGTCACCGATCAATAATGACAATACTGTTTGTTATTGCAAAAAATTAAACTTTGCAAAtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123445 True 1559 lncRNA 0.46 1 5573451 5575009

Neighbor

gene id symbol gene type direction distance location
dync1i1 LOC105016552 coding upstream 833 5542994 ~ 5572618 (+)
ptp4a3b LOC106596188 coding upstream 30584 5480975 ~ 5542867 (+)
ccn4b wisp1 coding upstream 116321 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 126251 5348252 ~ 5447200 (+)
phf20l1 LOC100196869 coding upstream 223779 5321554 ~ 5349672 (+)
LOC110506279 LOC106595015 coding downstream 357 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 40987 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 237238 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 266508 5841517 ~ 5854355 (+)
LOC110505637 LOC106573538 coding downstream 378972 5953886 ~ 5958813 (+)
G108616 NA non-coding upstream 39332 5532987 ~ 5534119 (+)
G108615 NA non-coding upstream 40993 5529962 ~ 5532458 (+)
G108613 NA non-coding upstream 44385 5526704 ~ 5529066 (+)
G108608 NA non-coding upstream 64287 5508438 ~ 5509164 (+)
G108598 NA non-coding upstream 80707 5491991 ~ 5492744 (+)
G108588 LOC106573343 non-coding downstream 25654 5600663 ~ 5602911 (+)
G108584 NA non-coding downstream 29974 5604983 ~ 5606316 (+)
G108621 NA non-coding downstream 37407 5612416 ~ 5613037 (+)
G108622 NA non-coding downstream 38576 5613585 ~ 5614123 (+)
G108623 NA non-coding downstream 39212 5614221 ~ 5614705 (+)
G108354 LOC106573122 other upstream 273518 5296179 ~ 5299933 (+)
G108280 NA other upstream 436459 5136356 ~ 5136992 (+)
G108048 NA other upstream 715177 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 761876 4808739 ~ 4811575 (+)
G108682 NA other downstream 144956 5719965 ~ 5725579 (+)
G108702 NA other downstream 205205 5780214 ~ 5782921 (+)
G108733 NA other downstream 325502 5900511 ~ 5900950 (+)

Expression


Co-expression Network