G108588 (LOC106573343)


Basic Information

Item Value
gene id G108588
gene name LOC106573343
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5600663 ~ 5602911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123450
CAGAAGGGCTGAAAACTCACAGATACAAATGCCAGTGGCTCACACAATTCATAATGACACAGTTCATAATGACACAGTTCATAATGACACAGTTCATAATGACACAATTCATAATGACACAGTTCATACTGTCACAGTTCATAATGACACAGTTCATAATGACACAGTTCATACTGTCACAGTTCATAATGACACAGTTCATAATGACAGTTCATAATGACACAGTTCATAATGACAGTTCATAATGACACAGTTCATAATGACACAGTTCATAATGACAGTTTATAATGACACAATTCATAATGACACAGTTCATAATGACAGAATTCATAATGACACAGTTCATAATGACAGTTCATAATGACACAGTTCATAatgacatttgggacacacataATGGCTTGATATTTTGTTAAGGGGATAGTTAAGGATTTATTCCTCATAAATGGCATTAgacatatttatttaacctttatttaactaggcaagtcagttcaggacaaattcttatttacaatgacgggccaattgtgcgccgccctatgggactcccaatcacgaccggttgtgatacagtctggaatcgaaccagggtctgtagtgacgcctctagcgctgagatgcagtgacttagaccgctgtgccacttgggagacaTAATAAAACCACAACAGTGCTGTAGCTTTAATAATACAATCTCTCTACACAATGCATCAGCAGTACATGTAAAGGACATGCACATTCACAGTATAACAACAAGTGCCAGAACTGGATTTACTAATAATACATAATGGTGTTTCATGACTATTTCCATATTAAATACTTAGGAGCTCCGCTTTGTGGTTTCAAATGTGCTGAGAGACTGACGCTGAGAGGGACAACATTTAAGTGGGTTCAAAAGGTCAGATCCCTGAATTCACAATGTATCAtcaacaccctattccctttatagtgcactacttgtgaccagggTCCAGGTCAAAGCAGTGCGCTATATAGGAAAtgttgtgccatttgggacccagccAATAAGAAACGTCTCCTCCGTCTCAAGCATTGAAAAGGTATAACAAAGGCTTAAttagggaggacaggctcgtggtaatggctggagcagaatgagtggaatggtatcaaatgcatcaaacacgtggtttaaTCAAACACGTGTTTTATACCATACCATTCACTTAATTCTGGCCATTTTTATGTGCCGTCCTCCCCTCCCTGTGGTTTGTAGTGTTCTAGAATCTGACTGTAGAATCACAAGGTGATGACCattccgtcctcccctcagcagccccctGTGGTTTGTAGTGTTCTAGAATCTGACTGTAGAATCACAAGGTGATGACCATTccgtcctcctccacccctcccctctgtAGCACCAGGCTGCGTCGTAGCTCTGTCCTCAGGGTGAGCAGGCTGCTGTGGTTAAACACACCTCCATTCATCTCCCTGATGGCTGGGCTGCTGCCGTAGTGCTGCTGCAGGGTCAGGTCTCGGTTCAGTCTGAGGTTCAGGTTAGTGAGGCTGGGCTGTGAGTGATAGGAGGTTGAGGAGATGACAGAGTAAGGCCGACGGGGAGGGCGTCGGGTGGATGGCCTAGGAGAAGGCCTAGGactctgctggggctgggaccaAGCCTGGGAACGGGAGgctgtggaggtggaggcacTGGAGCGACGGGATGAGTTTCTGAGTCTTCTCTCAATCACAATGTCCAAGTCCTCGTCGCTCTGCAGCTCGTCATCAGTGAGGCTGTAGGCTCCCACACAGATGGGCATGCTGTGGTAACTCTGACAGATGGGCATGCTGTGGTAACTCTGGTAGTCTAAAGAGCTGACACTGCCTGAGTTTATCCCCGACATCCAGCTGCCGGTACGCACTATGTTATTACGCTGGTTCACCGGCTTCACCGTGATGATAAGATTGTGACTGTTTGCGATCATCATGTCTGTTACCTGGTCTAACACCTTGCCCATCACCTCAATCCCATTCACCTCAAGCACCTGGTCGTTGATGGCCAGCAGCCCTGTGCTCTCAGCCAGGCCTCCAGGGACCAGCCGTGAGATGAAGATCCCAGGTACCTTCTCCAGGCCGTGGGGAGTCACCCTCACAGTGGTCCCATCCCGGATATAGAACCCCAGGGGCCTCTCTGAGCCCTGGCGGTAAAGGCGCACCCGGCGCTGAGATGCGGGCAGGAAATCTGTGTCAATAATGGACGAGATGGGGCGGAAGTCCTG

Function

NR:

description
partitioning defective 6 homolog gamma-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123450 True 2249 lncRNA 0.47 1 5600663 5602911

Neighbor

gene id symbol gene type direction distance location
LOC110506279 LOC106595015 coding upstream 8410 5575366 ~ 5592253 (+)
dync1i1 LOC105016552 coding upstream 28045 5542994 ~ 5572618 (+)
ptp4a3b LOC106596188 coding upstream 57796 5480975 ~ 5542867 (+)
ccn4b wisp1 coding upstream 143533 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 153463 5348252 ~ 5447200 (+)
jarid2a LOC106573577 coding downstream 13085 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 209336 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 238606 5841517 ~ 5854355 (+)
LOC110505637 LOC106573538 coding downstream 351070 5953886 ~ 5958813 (+)
LOC110505679 LOC106579367 coding downstream 373289 5976200 ~ 6002265 (+)
G108583 NA non-coding upstream 25654 5573451 ~ 5575009 (+)
G108616 NA non-coding upstream 66544 5532987 ~ 5534119 (+)
G108615 NA non-coding upstream 68205 5529962 ~ 5532458 (+)
G108613 NA non-coding upstream 71597 5526704 ~ 5529066 (+)
G108608 NA non-coding upstream 91499 5508438 ~ 5509164 (+)
G108584 NA non-coding downstream 2072 5604983 ~ 5606316 (+)
G108621 NA non-coding downstream 9505 5612416 ~ 5613037 (+)
G108622 NA non-coding downstream 10674 5613585 ~ 5614123 (+)
G108623 NA non-coding downstream 11310 5614221 ~ 5614705 (+)
G108652 NA non-coding downstream 36760 5639671 ~ 5642231 (+)
G108354 LOC106573122 other upstream 300730 5296179 ~ 5299933 (+)
G108280 NA other upstream 463671 5136356 ~ 5136992 (+)
G108048 NA other upstream 742389 4857911 ~ 4858274 (+)
G108682 NA other downstream 117054 5719965 ~ 5725579 (+)
G108702 NA other downstream 177303 5780214 ~ 5782921 (+)
G108733 NA other downstream 297600 5900511 ~ 5900950 (+)

Expression


Co-expression Network