XLOC_020843 (si:ch73-213k20.5)


Basic Information

Item Value
gene id XLOC_020843
gene name si:ch73-213k20.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6952107 ~ 6960943 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041053
ATGAAAGtcttattttctctctttttgctACTGTTCTTAACGTTACACGAGAATGGTGTGTCTGGTGTTGGTAAAGATGATGTGTCTGTGAGCAGAGGAGATTCAGTCACTCTACACACTGGTGTTAAAACCAACCAACAATACATAATTGTGTGGTTGTATGAAGGCATTCGTATCGCTGTAATCAGAGGAGACCTCAGTTATATCTGTACAGATGTTCAATGCAATAATGGCACTGagagattcagagacagactgaagcTGGATCATCTGACTGGATCTCTGACCGTCATGAACACCAGACTCAGAGATGCTGGAGAATATCAGCTACTGATCAGCAGCAGCAAAAGCATCAATGAAATGATCTTCAGAGTTGTTGTTAAAGatgTCTATTGGGTTGATGAAGACGATAATGATGAAGAGTCAGTATCAGTGATTGAGGGAGATTCAGTCACTCTACACACCGGTGTTAAAACAGACCAACAGGACAGAATTGTGTGGTTTAATGAAGGCAGTCGTGTCGCTGTAATCAGCGGAGATCTCAATGTTATCTGCACTGACGTTCAGTGTGATAACAGCACTACGAGATTCAAAAACAGACTGAATCTGGATCatcagactggatctctgaccatcatgaACAGCAGAAACACAGATGCTGGAGAATATCAGCTACTGATCTTTAGCAGCTTCCGCTTGAGTAAAAAGATCTTCAGAGTTGTTGTTCATGATGTCCATTGGGTTCAAGAAGTGAAAGTGGAAGTGTCCGTGACGGATGGATATTCAGTCACTCTAAACACTGACACTACAACAAAGCAGCTCCACAAAATTAAATGGTATTTCAATAACATTTGTGTTGCTCAGATCAGAGGAGATCTCAGTTACATCTGCACAGATGTTCAGTGCGATGAAGGCGCTGAGAGATTCGGAGACCGACTGAAGCTGGATCATcaaactggatctctgaccatcatgaACATCAGAAACAGAGATAGAGGAGAATATAAACTGGAGATCATCAGCAACAGAGGCAGCAGAAGAAAGATCTTCAGAGTTCTTGTTGATGGTGAGTCTGACAAAgtatttgattattaattattattcatattagcTGGTATACTAAGCTAGAACTGCAATTAAATGACGTAGCTGTGATGTATGTATATGTAGCTGTACTGTACATGTGATGTTAGCGCGTGTTTAGATCAGATCATAACCTTCTAATGTGCAGAGCTGTGTGTGTTAGTCTAGTGTAACCACAGATGATGCACTTTGAATACACTTTATATTGATAAGGGTGGTCAATGATcgattatatataattaaacgtGTGATTATATGCACCCATGACGGTTCAATGCAGCCTCAGATTTTGTCATAATAATGTGGGAAAAATCTTCAAATGCTTTGTCATGACAGTCGTCCATCCAGATTGCAGCACCACGAGGCTCAGCTAAGCACTGTTTGTGTGGTGCTTTGGGTTTTCCACATCAAGAATGGATCAGAGCTTCAGAGAGGGGCGTGGTGAGCTGCAGCTCATTATCATTTAAAGATACAGGCACCAAAATGGGTCACTGTGGACTGAGGTGTTTTTGAAAAGGTAAAAGGGTGTTTATTTACACTTGAAGAATTTAACCAAAGAAAGTTATAGACTTTTGATTAAGGCCTCAGAATCATTTCAGTTTGTGAAAAAGGGTGTCCCATGTCAGCAATTTAATGGATCACCTGTTTCATTCAGATTTGTTTGCCTAAAATGTTCAACACTTAAACATCAAGTGGCATGCTGTGTTATCAATGCAATATTTTCTGCTTACAGTTCTAATGTTATTATCATAAAAATGCTTAACATTTGTTTTCTCTGTGCTCCAGTTTTCTCACTGTTTTGATGTTTTAGCGTAGTTCATCCAATTGATGAGTAGAAATGTGTGATCATCCAATTTCTCAGTCACTCTTTTAAAAATAACATCTGGTCTTCATATATCCAGATTCTGGGCCGTTTTCAGCTGCTGTACCAAGACTATATGAAATTGTTGCTATTGCTGCTGCTGTTCTGCTTCTTGCTGCTGCAGTTTCTGGTGTAATTTGCTGCTACAAGAGCAAAGCAAATGGTAAAAGTGAGTATAACGTTCAGATTAAGTAAAAAGATGGACATATGATGTATATTACATTCATAGATTTGTTTTAAAGCGTCAGAATGTTTAATTGAGTTTGTTTTAATTCTTCAGTCAGACTCCAGGAGGCAGCGGAGTGATCAGGTGAGATATTGTGAGCACAAGTCATCAAAACTGTTATGCAATAAGTTAAATGGCAAagcatttctttatttaaacGATTATGAAACCCCCTACTTTCAgtttaagggtgttttcacacctagacttttgatTCGGAACCTGGCACATTTCCCCAGTTAACGCGggtcatttggcatatgtgaatccagcaatcacgcTATAATCAAAACAattggtctcggctcgattgaaacgaactctgtaGTGGATCGAATGTAGTGcgaaagcaatacgatccgagCCAGgctatattacagtgtattatgaatatgtaataggcatatatggcagtatgaagagagaattatgagtagtgCGGGAGGTCATTCCTACtggtaaatgtgcatttcatgtcaaatacgaaagtgaaagtatgttaactattaacgagagctgttaaTCCATTTTAAAATTGACTGAAccgcagtcttggtttatctgttatttctttctaagatgtaaagcctataatgcataagtcaatggctatgtatgagaaagccttacctctgatttatattcgATGACAATATATGTGaatgtcaccattcaaaattaaagcaaagcttttcacttataatgtcttattgctcatcgtcataaattaaaataaggacttATGGctgctgagcgggactctgctaaataaaccctgaaactctgaccaatgtgaggagagtttactcgcacgtgacttatTTTAactcttttggtctgtttagaaactttgccatgtgaaagcgaactgcaccaagaacaaagtgcaaAAAAGGAGAAATTTTTATTCTTGTTTCGAAACAAAATAAtcgatccacaggtgtgaaagcac
>TCONS_00041054
GACATTATGAAATCATACTAatagtaacattattattattactattattgttattagaaaAATGTCTGTCACACCACACAAAAAGTAGTTGTGATATTGTTGATCTAATAATGAACTGCGCTTTTCTTCCAGGTGTGTCTGGTGTTGGTAAAGATGATGTGTCTGTGAGCAGAGGAGATTCAGTCACTCTACACACTGGTGTTAAAACCAACCAACAATACATAATTGTGTGGTTGTATGAAGGCATTCGTATCGCTGTAATCAGAGGAGACCTCAGTTATATCTGTACAGATGTTCAATGCAATAATGGCACTGagagattcagagacagactgaagcTGGATCATCTGACTGGATCTCTGACCGTCATGAACACCAGACTCAGAGATGCTGGAGAATATCAGCTACTGATCAGCAGCAGCAAAAGCATCAATGAAATGATCTTCAGAGTTGTTGTTAAAGatgTCTATTGGGTTGATGAAGACGATAATGATGAAGAGTCAGTATCAGTGATTGAGGGAGATTCAGTCACTCTACACACCGGTGTTAAAACAGACCAACAGGACAGAATTGTGTGGTTTAATGAAGGCAGTCGTGTCGCTGTAATCAGCGGAGATCTCAATGTTATCTGCACTGACGTTCAGTGTGATAACAGCACTACGAGATTCAAAAACAGACTGAATCTGGATCatcagactggatctctgaccatcatgaACAGCAGAAACACAGATGCTGGAGAATATCAGCTACTGATCTTTAGCAGCTTCCGCTTGAGTAAAAAGATCTTCAGAGTTGTTGTTCATGATGTCCATTGGGTTCAAGAAGTGAAAGTGGAAGTGTCCGTGACGGATGGATATTCAGTCACTCTAAACACTGACACTACAACAAAGCAGCTCCACAAAATTAAATGGTATTTCAATAACATTTGTGTTGCTCAGATCAGAGGAGATCTCAGTTACATCTGCACAGATGTTCAGTGCGATGAAGGCGCTGAGAGATTCGGAGACCGACTGAAGCTGGATCATcaaactggatctctgaccatcatgaACATCAGAAACAGAGATAGAGGAGAATATAAACTGGAGATCATCAGCAACAGAGGCAGCAGAAGAAAGATCTTCAGAGTTCTTGTTGATGATTCTGGGCCGTTTTCAGCTGCTGTACCAAGACTATATGAAATTGTTGCTATTGCTGCTGCTGTTCTGCTTCTTGCTGCTGCAGTTTCTGGTGTAATTTGCTGCTACAAGAGCAAAGCAAATGGTAAAAGTGAGTATAACGTT

Function

symbol description
si:ch73-213k20.5 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120727-11 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000058753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041053 False 3123 mRNA 0.39 4 6952107 6960943
TCONS_00041054 True 1286 mRNA 0.41 4 6953102 6959769

Neighbor

gene id symbol gene type direction distance location
XLOC_020842 zgc:171500 coding downstream 11009 6932299 ~ 6941098 (-)
XLOC_020841 CABZ01065328.1 coding downstream 28760 6922006 ~ 6923347 (-)
XLOC_020840 FO904898.4 coding downstream 67126 6881445 ~ 6884981 (-)
XLOC_020839 FO904898.1 coding downstream 97523 6829466 ~ 6854584 (-)
XLOC_020838 FO904898.6 coding downstream 133579 6809366 ~ 6818528 (-)
XLOC_020844 fgfr1bl coding upstream 1981 6962924 ~ 6968756 (-)
XLOC_020845 fgfr1bl coding upstream 8534 6969477 ~ 6991514 (-)
XLOC_020846 gpd1b coding upstream 35103 6996046 ~ 7006974 (-)
XLOC_020847 smarcd1 coding upstream 48119 7009062 ~ 7025393 (-)
XLOC_020848 asic1b coding upstream 83682 7044625 ~ 7168571 (-)
XLOC_020835 NA non-coding downstream 199081 6727540 ~ 6753026 (-)
XLOC_020834 NA non-coding downstream 240591 6696517 ~ 6711516 (-)
XLOC_020833 CR352226.3 non-coding downstream 289201 6661712 ~ 6662906 (-)
XLOC_020831 CR352226.2 non-coding downstream 350520 6587550 ~ 6601587 (-)
XLOC_020851 NA non-coding upstream 461941 7422884 ~ 7423468 (-)
XLOC_020852 BX511034.4 non-coding upstream 478312 7439255 ~ 7442462 (-)
XLOC_020857 NA non-coding upstream 651061 7612004 ~ 7622403 (-)
XLOC_020858 BX511034.3 non-coding upstream 653729 7614672 ~ 7617991 (-)
XLOC_020860 NA non-coding upstream 688076 7649019 ~ 7651852 (-)

Expression


Co-expression Network