G108644


Basic Information

Item Value
gene id G108644
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5758602 ~ 5760920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123520
TCACAGAGCCCCGAGTCTGGCCAGAGACACCTCTGTGTGGAGCGTGCAGAGACTAGCACCCTGAGTCTGGCCAGAGAGACTATTCTGTGACCTCTTTATCTCAGCTAACAACCCTTTCTTGTGATACTACAGTATCAGGATACTAACAAGataccactacagtactacaggatACTAACAAGATACCACTACAATACTACAGGATACCACTACAATACTACAGGataccactacagtactacaggataccactacagtactacaggaaACCCCTACAATACTACAGGATACTAACAAGATACCACTACAGAACTACAGGATACCCCTACAGTACTACAGGATACCACTACAATACTACAGGATACCCCTACAGTACTACAGGATACCCCTACAGTACTACAGGATACCACTACAATACTACAGGATACTAACAAGATaccactacagcactacaggaTACTAACACGATACCACTACAATACTACAGGATACTAACAAGATACCACTACAATACTACAGGATACCATTACAATACTACAGGATACTAACAAGataccactacagtactacaggatAGTAACACCAGCAGAGGAACCCTTGACTTTGTCGTCACACTTGTATTTTCTTATAAGCACTAACTTTGCTGACAGCTGCTTTATTGAGGAAtggttttaaatcaaatcaaactttatttgtcatgtgcgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcttatttacaggctctaaccgacagtgcaaaaaaggtattaggtgaacaaagaaataagtaaagaaataaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagcgaggctatatacagtagcgaggctataaaagtagggaggctacatacagacttACTGTGACTGAGATACATGGCTGTTTCACCTAGTTACCTTAAGATgaaaatcactctggataagagcacctgctaaatgactaacatgtaaattTATATCACCCACATTGTAGGCTAATTATTTACCTGCCTGCCCAAGTGTGTCTCCTCCGGATCAGAAAACAACCGGACGGTTCTGTTATGTGAAGCCAGACATGTATCGTGACTTTAGTCCCAGTAAGCTCTAGTCCCCACTGTGAGCCATGCCTCTCTCGGTCTTAAAGACAGGAAGCACCTACCCACTTCTCAGAACAGCAGGAAGTGGTTATGTTACTTTTATGGAACCATAGGTGTGTCTGTGTTACGGCTAGAGGTGCTACATCCTTTTAAAAAGACGCATATTGTTGCAGTGAATCTTTTGTCCTAGATCAAGCTCTACTCATCATCAGCTGCCTTTACAAGAACTGACATCCGTGTGGAGTCAAGTAACAGCAGATTGAGGAACTAAGTATCTTCTTTGTTTTCTGACAAAAGTTCATCCCAGAAATGCtgcctcattgaaaataagaatttcaaCCCTGAATCATTGGATTCTCACAAATCCTTGAAATGCCCGCCAAGGTGCCAATACAGGCTCAGGAATTCCAGGTAGGTCATTTCTCCTTGTCAGAATCTACCAAAGCATTtgaacacagtcagtcagtgtcaCCCCTGTTGTAAAGGGGTGTTGTTGTCagtgggctggatgtgtcaactCGACTAGTCCCAGGTGGGCAGGAAGTCAAGCCAGCTGTCACCAGGCAGGGCCCCAGAATAACTGTCTGTCCCCCaaacggctccctattccctttatagtgcactacttttggaccagggcccataggaaataCACAGGCTAGGGTGCCATTTCTAGGGAACACTAGGCTTCCATCTGGGAAGCTACCTGTGATCAGAGACATGCATTCTATCTTCCACATGGTGAACAGCAGCTCAACAGAACCAGCCTCTGATTCACTAGAAATACCACTCTCCTTTTATCACATATTGCAACACCACAACTCTTCATCCACAATACATCTACATGACGGCCTCCCACAGGTAACGTGGTGTCCTCCCATAGGTAACATTATGTCCTCCCATAGGTAACATCCCATAGGTAACATTATGGCCTTCCATAGGTAACATCCCATAGGTAACATTATGGCCTTCCATAGGGAACATCCCATAGGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123520 True 2205 lncRNA 0.43 2 5758602 5760920

Neighbor

gene id symbol gene type direction distance location
jarid2a LOC106573577 coding upstream 4755 5615996 ~ 5753847 (+)
LOC110506279 LOC106595015 coding upstream 166349 5575366 ~ 5592253 (+)
dync1i1 LOC105016552 coding upstream 185984 5542994 ~ 5572618 (+)
ptp4a3b LOC106596188 coding upstream 215735 5480975 ~ 5542867 (+)
ccn4b wisp1 coding upstream 301472 5451499 ~ 5457130 (+)
mylipb LOC106596795 coding downstream 51327 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 80597 5841517 ~ 5854355 (+)
LOC110505637 LOC106573538 coding downstream 193061 5953886 ~ 5958813 (+)
LOC110505679 LOC106579367 coding downstream 215280 5976200 ~ 6002265 (+)
LOC118937375 NA coding downstream 217346 5978266 ~ 5979890 (+)
G108643 NA non-coding upstream 649 5757004 ~ 5757953 (+)
G108677 NA non-coding upstream 46692 5711149 ~ 5711910 (+)
G108676 NA non-coding upstream 48156 5709357 ~ 5710446 (+)
G108675 NA non-coding upstream 49552 5707717 ~ 5709050 (+)
G108663 NA non-coding upstream 94743 5661042 ~ 5663859 (+)
G108694 NA non-coding downstream 7026 5767946 ~ 5769067 (+)
G108697 NA non-coding downstream 13460 5774380 ~ 5774708 (+)
G108698 NA non-coding downstream 14987 5775907 ~ 5779231 (+)
G108699 NA non-coding downstream 15950 5776870 ~ 5778747 (+)
G108702 NA non-coding downstream 19294 5780214 ~ 5782921 (+)
G108682 NA other upstream 33023 5719965 ~ 5725579 (+)
G108354 LOC106573122 other upstream 458669 5296179 ~ 5299933 (+)
G108280 NA other upstream 621610 5136356 ~ 5136992 (+)
G108733 NA other downstream 139591 5900511 ~ 5900950 (+)
G108775 LOC106606109 other downstream 296076 6056996 ~ 6058335 (+)

Expression


Co-expression Network