G108805 (LOC106594197)


Basic Information

Item Value
gene id G108805
gene name LOC106594197
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6151712 ~ 6199341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123751
ggAGAAAAGAGGACGGTGAGAGTAAGTGATGGGAGTAGAAATAGAGGAGAGTTAGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGACGTAGAGGTGGGAGGTTGAGAAGAGGGGAGATGGCAGGGGATAGAAagcaaagagggagggagggaaagagagggaggagacatgtGAATGGAATTATAGGGTTGAAGAAAGGACATGGTTAGATCCAAAACCACTCTGAATAAAGACAAGGAATAAGCATGTCTCCGTTAGTGTGTCTACCTGCTGCTCTTCTCCTATAGCCAGTGTGTAGGCCAAGATGCTGTGGAGCTCTTCAGCATTAGGACACTTGAGGAGGAAGTCTctcagcagagagaacagagagatctGAACAGTCTGCTTTTCATCAGACAGAGGACTGCCATCTTTCTCCACACTGTAGTGTGTCCGTATGGTATCCAGGATGTACTGCACTCCATACTTCTTCCTCATGCGCTGCTTCCCATCCTTGATCACAGACGACAGGTACTGGACATGGCCCAGACACACAGCGAAGTGGCTGCTGCTCCAGATGCGGAAGTCAAATAGCAGGTGTTGGTAGAGCTGCAGGAGCAACGGACTGTTCTCCTCACTGGATACCTGCTCCAACAGGAACTGACACGCCATCAGAACAGACATATCCATCATACTACCTGGGACCTTAGTGAGCATGGCTCCTATAATGCTGGGTCCGTGGCAGTTCAGTAGGCTCTCCTGGTTGACAGGGTGATGACGAATCAGATTCTTCACCATCAGCAGGAAGGCTGCTACACTGTTCCTCTCCAGCCGaccatCGGAGGACTTGCCCAGTGGCAGCAGCATGTCGACAGGCCCCCGGGAGGAGCTACAGGTTAGTTCTGGTCCAAGCAGGTCTGACGTCTCCTGACCTCCTCCCTCCGCCTGCTCTGGCTCACACACCTGTTCCAGGAGGGGCAGTAGAACCCCCATGCCCCCCACTGTGTTCAACACATCCTACAGGGATACGCACACAGaaacatacatacatgcacacagtcagacacagagacatacacacacagacacagagacatacacacagacacagagacatacacagtcagacacagagacatacacagtcagacacagagacatacacagtcagacacagagacatacacacagacacagagacatacac
>TU123756
GGTCTCCACCCAgcttcaaaacacacacagtccAACAGTCGGTCTCCACCCAgcttcaaaacacacacagtccAACAGTCGGTCTCCACCCAgcttcaaaacacacacagtccAACAGTCGGTCTCCACCCAGCTTCAAAACATGGGTAGGGAGCGCACGTACACACGGACGTACACACGGAcgtacacacgcacgtacacacgcacgtacacacacacgcaccctgtCAGGCGTCTCCTCCATGTATTATAAGGGTCAAAGAGACTCTCCAACAGCATTAGGCCATACTGAATCACTGTCTGAAGGGACGACTGATCCGCAGGCTGCTTCTtcagCTGAGTCAAGCAGAAGTTTAACAGTTTAATGGTCTCGAAGACAACGCCTGGGGTCTTCTCTGGGTCAATGTTTTCCATATTCCTGCAGACGATAATGAAGAACTTAATAAGCAGCAGGGGGTGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGTGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGTGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGTGAATGGCACTGTGTGATAGCTGGTCACTGAGGAACACCAGTATGTCCCTGGGTACGAGGGGAACCTCCGCAATATAGTTCTCCAGCCTGAG
>TU123748
TCTCTGGGtcaatagacagtatattatcatTCTGGTtcaatagacagtatattatcatTCAGGCtcaatagacagtatattatcatTCTGGTtcaatagacagtatattatcatTCAGGCtcaatagacagtatattatcatTCTGGCtcaatagacagtatattatcatTCTGGCtcaatagacagtatattatcatTCAGGCTCAATAGTCATTCATCATTCAGGCTCAATATCATTCAGGCtcaatagacagtatattatcatTCTGGCtcaatagacagtatattatcatTCTGGCtcaatagacagtatattatcatTCTGGCtcaatagacagtatattatcatTCTGGCtcaatagacagtatattatcatTCTGgctcaaaagtaaaagtatattAATCTAGAGTATGAATGAGTGATATAGTATAGTTTGCAGATCCTCCATTGTTGAAAATTACTAATGTGTaacttaagtgtgtgtgtgtgtgtgtgtatatgaggtTCATCTAGGGTTGTGTCTTACCTGAGTCAAGCAGAAGTTTAACAGTTTAATGGTCTCGAAGACAACGCCTGGGGTCTTCTCTGGGTCAATGTTTTCCATATTCCTGCAGACGATAATGAAGAACTTAATAAGCAGCAGGGGGTGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGTGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGTGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGAGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGAGCAGGGTGCTGTTGTTACTGTCGCCCCCAGAGAGGTGAATGGCACTGTGTGATAGCTGGTCACTGAGGAACACCAGTATGTCCCTGGGTACGAGGGGAACCTCCGCAATATAGTTCTCCAGCCTGAG

Function

NR:

description
PREDICTED: neurobeachin-like protein 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123751 False 1289 lncRNA 0.52 7 6151712 6160153
TU123756 False 657 lncRNA 0.53 5 6195631 6199341
TU123748 True 922 TUCP 0.42 5 6196932 6199341

Neighbor

gene id symbol gene type direction distance location
LOC118937376 NA coding upstream 57772 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 102211 6002992 ~ 6049501 (+)
LOC110505679 LOC106579367 coding upstream 149447 5976200 ~ 6002265 (+)
LOC118937375 NA coding upstream 171822 5978266 ~ 5979890 (+)
LOC110505637 LOC106573538 coding upstream 196267 5953886 ~ 5958813 (+)
ccdc12 ccd12 coding downstream 32028 6231369 ~ 6250042 (+)
cep72 LOC106573558 coding downstream 87217 6286558 ~ 6312599 (+)
trip13 LOC106590995 coding downstream 179032 6378373 ~ 6389788 (+)
nkd2b LOC106574162 coding downstream 203335 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 346027 6545368 ~ 6629469 (+)
G108802 NA non-coding upstream 13880 6136775 ~ 6137832 (+)
G108799 NA non-coding upstream 17272 6133376 ~ 6134440 (+)
G108779 LOC106573589 non-coding upstream 32668 6117837 ~ 6119044 (+)
G108773 NA non-coding upstream 64095 6087176 ~ 6087617 (+)
G108828 NA non-coding downstream 2974 6202315 ~ 6203532 (+)
G108829 NA non-coding downstream 4432 6203773 ~ 6204116 (+)
G108836 NA non-coding downstream 15911 6215252 ~ 6216642 (+)
G108843 NA non-coding downstream 28359 6227700 ~ 6228186 (+)
G108844 NA non-coding downstream 29068 6228409 ~ 6228747 (+)
G108775 LOC106606109 other upstream 93377 6056996 ~ 6058335 (+)
G108733 NA other upstream 250762 5900511 ~ 5900950 (+)
G108702 NA other upstream 369068 5780214 ~ 5782921 (+)
G108874 LOC106573552 other downstream 82730 6282071 ~ 6285940 (+)
G109020 NA other downstream 433737 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 656745 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 709206 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 742175 6941465 ~ 6944043 (+)
G108818 NA non-coding upstream 18689 6177254 ~ 6178243 (+)

Expression


Co-expression Network